Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A12
         (914 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00361-1|CAA68439.1|   89|Homo sapiens ubiquitin precursor protein.    40   0.013
X56999-1|CAA40314.1|  128|Homo sapiens ubiquitin-52 amino acid  ...    40   0.013
X56998-1|CAA40313.1|  128|Homo sapiens ubiquitin-52 amino acid  ...    40   0.013
X56997-1|CAA40312.1|  128|Homo sapiens ubiquitin-52 amino acid f...    40   0.013
DQ479851-1|ABE96835.1|  128|Homo sapiens ubiquitin A-52 residue ...    40   0.013
BC101832-1|AAI01833.1|  128|Homo sapiens ubiquitin A-52 residue ...    40   0.013
BC101830-1|AAI01831.1|  128|Homo sapiens ubiquitin A-52 residue ...    40   0.013
AF348700-1|AAK31162.1|  141|Homo sapiens ubiquitin A-52 residue ...    40   0.013
AC005253-2|AAC25582.1|  128|Homo sapiens ubiquitin-52 amino acid...    40   0.013
BC090853-1|AAH90853.1|  289|Homo sapiens HOXD8 protein protein.        31   4.4  
BC038709-1|AAH38709.1|  289|Homo sapiens homeobox D8 protein.          31   4.4  
AY014304-1|AAG42152.1|  290|Homo sapiens HOXD8 protein.                31   4.4  

>Y00361-1|CAA68439.1|   89|Homo sapiens ubiquitin precursor protein.
          Length = 89

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 68  AVNCRKKKCGHTNNLRP 84


>X56999-1|CAA40314.1|  128|Homo sapiens ubiquitin-52 amino acid
           fusion protein protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>X56998-1|CAA40313.1|  128|Homo sapiens ubiquitin-52 amino acid
           fusion protein  protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>X56997-1|CAA40312.1|  128|Homo sapiens ubiquitin-52 amino acid
           fusion protein protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>DQ479851-1|ABE96835.1|  128|Homo sapiens ubiquitin A-52 residue
           ribosomal protein fusion product 1 protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>BC101832-1|AAI01833.1|  128|Homo sapiens ubiquitin A-52 residue
           ribosomal protein fusion product 1 protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>BC101830-1|AAI01831.1|  128|Homo sapiens ubiquitin A-52 residue
           ribosomal protein fusion product 1 protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>AF348700-1|AAK31162.1|  141|Homo sapiens ubiquitin A-52 residue
           ribosomal protein fusion product 1 protein.
          Length = 141

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 120 AVNCRKKKCGHTNNLRP 136


>AC005253-2|AAC25582.1|  128|Homo sapiens ubiquitin-52 amino acid
           fusion protein protein.
          Length = 128

 Score = 39.9 bits (89), Expect = 0.013
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLRP 107
           A NCRK KCGHTNNLRP
Sbjct: 107 AVNCRKKKCGHTNNLRP 123


>BC090853-1|AAH90853.1|  289|Homo sapiens HOXD8 protein protein.
          Length = 289

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = -3

Query: 672 GKPYXPPXGX*NPFPQPXXRGXGXNXR-GNGXGPQXPXXXXRGVGXXXXPXKXXXPPPXP 496
           G P+ PP    +P P P   G G   R G G     P            P     PPP P
Sbjct: 60  GFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPP 119


>BC038709-1|AAH38709.1|  289|Homo sapiens homeobox D8 protein.
          Length = 289

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = -3

Query: 672 GKPYXPPXGX*NPFPQPXXRGXGXNXR-GNGXGPQXPXXXXRGVGXXXXPXKXXXPPPXP 496
           G P+ PP    +P P P   G G   R G G     P            P     PPP P
Sbjct: 60  GFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPP 119


>AY014304-1|AAG42152.1|  290|Homo sapiens HOXD8 protein.
          Length = 290

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = -3

Query: 672 GKPYXPPXGX*NPFPQPXXRGXGXNXR-GNGXGPQXPXXXXRGVGXXXXPXKXXXPPPXP 496
           G P+ PP    +P P P   G G   R G G     P            P     PPP P
Sbjct: 60  GFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPP 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,800,364
Number of Sequences: 237096
Number of extensions: 1268143
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)