Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A12
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-1|CAB04967.1|  128|Caenorhabditis elegans Hypothetical pr...    31   0.87 
L31492-1|AAC37252.1|  128|Caenorhabditis elegans ubiquitin/ribos...    31   0.87 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   8.1  

>Z82083-1|CAB04967.1|  128|Caenorhabditis elegans Hypothetical
           protein ZK1010.1 protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLR 104
           A+NCRK KCGH++ LR
Sbjct: 107 ASNCRKKKCGHSSELR 122


>L31492-1|AAC37252.1|  128|Caenorhabditis elegans
           ubiquitin/ribosomal fusion protein protein.
          Length = 128

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 57  ATNCRKTKCGHTNNLR 104
           A+NCRK KCGH++ LR
Sbjct: 107 ASNCRKKKCGHSSELR 122


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 164  SIVTINFPFGYYLILDLLFGSQIVSVSALCLATVGSXEDPTL 39
            S  TIN P GY L+  +   S+ +SV  L  A  G+ ED T+
Sbjct: 1410 SASTINCPIGYDLVNGMCVNSETLSVIQLA-APGGACEDGTI 1450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,834
Number of Sequences: 27780
Number of extensions: 162302
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)