Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_A08
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 345 4e-96
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 345 5e-96
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 345 5e-96
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 173 3e-44
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 170 3e-43
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 99 8e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 6e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 43 5e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 2e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.014
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.024
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 31 0.30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 31 0.30
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 30 0.39
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.39
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.69
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 345 bits (849), Expect = 4e-96
Identities = 170/240 (70%), Positives = 187/240 (77%)
Frame = +1
Query: 190 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKY 369
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL AERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 550 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDXMLEPS 729
KQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GD M+EP+
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
Query: 730 TKMPWVQGMAGGA*GRQS*RKMPH*SSRCHLXPXRPXDKPLXFSLQXVYXIXGXGTGPXG 909
T MPW QG K + P RP DKPL LQ VY I G GT P G
Sbjct: 204 TNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 52.8 bits (121), Expect = 6e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTG 188
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 746 FKGWQVERKEGKADGKCLIEALDAIXHLXAPXTSPXXFP 862
++GWQ E K G GK L+EA+D+I P P P
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 345 bits (848), Expect = 5e-96
Identities = 169/240 (70%), Positives = 187/240 (77%)
Frame = +1
Query: 190 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKY 369
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL AERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 550 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDXMLEPS 729
KQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GD M+EP+
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
Query: 730 TKMPWVQGMAGGA*GRQS*RKMPH*SSRCHLXPXRPXDKPLXFSLQXVYXIXGXGTGPXG 909
T MPW QG K + P RP DKPL LQ VY I G GT P G
Sbjct: 204 TNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 52.8 bits (121), Expect = 6e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTG 188
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 746 FKGWQVERKEGKADGKCLIEALDAIXHLXAPXTSPXXFP 862
++GWQ E K G GK L+EA+D+I P P P
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 345 bits (848), Expect = 5e-96
Identities = 169/240 (70%), Positives = 187/240 (77%)
Frame = +1
Query: 190 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKY 369
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL AERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 550 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDXMLEPS 729
KQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GD M+EP+
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
Query: 730 TKMPWVQGMAGGA*GRQS*RKMPH*SSRCHLXPXRPXDKPLXFSLQXVYXIXGXGTGPXG 909
T MPW QG K + P RP DKPL LQ VY I G GT P G
Sbjct: 204 TNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 52.8 bits (121), Expect = 6e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTG 188
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 746 FKGWQVERKEGKADGKCLIEALDAIXHLXAPXTSPXXFP 862
++GWQ E K G GK L+EA+D+I P P P
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 173 bits (421), Expect = 3e-44
Identities = 81/192 (42%), Positives = 126/192 (65%), Gaps = 4/192 (2%)
Frame = +1
Query: 190 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKY 369
++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+++ FET
Sbjct: 257 NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 316
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
+++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+
Sbjct: 317 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI 376
Query: 550 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDXMLE 723
L+V +NKMD +SE R++E ++S +++++ GYN V ++P+S + G + +
Sbjct: 377 NHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 436
Query: 724 --PSTKMPWVQG 753
S+ PW QG
Sbjct: 437 RVDSSVCPWYQG 448
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKSTTTGS 191
K H+NIV IGHVD+GKST G+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGN 257
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 170 bits (413), Expect = 3e-43
Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 3/190 (1%)
Frame = +1
Query: 193 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKYY 372
++++ G I+ R+++K EA GKGSF YAW+LD ER RG+T+D+A FE+ K
Sbjct: 197 IMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256
Query: 373 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 552
I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+
Sbjct: 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGIS 316
Query: 553 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDXML--E 723
+++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G ++ +
Sbjct: 317 EIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374
Query: 724 PSTKMPWVQG 753
S W +G
Sbjct: 375 SSDLYKWYKG 384
Score = 30.7 bits (66), Expect = 0.30
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKSTTTG 188
K +++VV GHVDSGKST G
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLG 195
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 99.1 bits (236), Expect = 8e-22
Identities = 53/130 (40%), Positives = 79/130 (60%)
Frame = +1
Query: 256 EMGKGSFKYAWVLDKLXAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 435
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 436 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 615
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 616 EEIKKEVSSY 645
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 120 KEKTHINIVVIGHVDSGKSTTTGS 191
++K H+NI IGHVD GK+T T +
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTAA 72
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 6e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +1
Query: 289 VLDKLXAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 468
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 469 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 582
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 292 LDKLXAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 459
LDKL ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 460 VAAGTG 477
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +1
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 550 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 648
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.014
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 262 GKGSFKYAWVLDKLXAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 435
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 436 QADCAVLIVAAGTG 477
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.024
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 352 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 522
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGS 191
MGK N+ VI HVD GKST T S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDS 38
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 367 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 462
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGS 191
MGK N+ VI HVD GKST T S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDS 38
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 367 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 462
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 332 IVIPRSRSAXSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 204
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 367 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 477
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 379 IIDAPGHRDFIKNMITGTSQADCAVLIV 462
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 295 DKLXAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 417
+K+ A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 310 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 462
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,269
Number of Sequences: 5004
Number of extensions: 72153
Number of successful extensions: 244
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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