Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_A07
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 0.96
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 30 2.2
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 30 2.2
01_01_0083 + 631196-631675 29 3.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.1
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.8
07_01_0080 + 587674-588510 29 6.8
05_07_0153 - 28051496-28051801,28051933-28052271 29 6.8
05_01_0142 - 940421-940701,941262-941574 29 6.8
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 0.96
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = -3
Query: 586 GGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXPPPP 413
G PP P P P SA G G P P + G G PPPP
Sbjct: 317 GTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 417 GGGXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXGXXGXG 539
G G G P PP P G PPPP G G G
Sbjct: 344 GAGSGPPPPPPPAAP-AAPRPPGPGPGPPPPPGAAGRGGGG 383
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = -1
Query: 570 PXGXXXXPPXPPXXGXXVFPPGGGGXPXXXXXXPPXXGXFFXXGKGXXXPPXP 412
P PP V+PP G P PP +F G+ PP P
Sbjct: 54 PPSGAVYPPQGYPSSHGVYPPPQGPYPPPHQPPPPGYQGYFNQGQQPYYPPPP 106
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 479 PPXPPXXVXFXGXGRAPXXPPXPPXXXPXP 390
PP PP G P PP PP P P
Sbjct: 233 PPPPPKPANIAGAPGLPLPPPPPPPPGPPP 262
>01_01_0083 + 631196-631675
Length = 159
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 523 PXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXPPPP 413
P GGGG P P G GG P PPPP
Sbjct: 78 PPPQGGGGGYIPYYQPPAGGGGG--GGGFNYPAPPPP 112
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 413 GXGGXXXPFPXXKKXPXXGGXXXXXXGXPPPPGGKTXXPXXGGXG 547
G GG P P P G PPPPGG+ GG G
Sbjct: 1191 GHGGVGGP-PTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGRG 1234
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = -3
Query: 610 PXXPPFXXGGXXPPXGXXXXXXXXPXPXXPXFS--AGGGGXXPXXXXPXPXXGSFFXGGE 437
P PP PP P P P A G P P P G +
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
Query: 436 GXPXPPPP 413
G P PPPP
Sbjct: 375 GGPPPPPP 382
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = -3
Query: 616 FFPXXPPFXXGGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGE 437
F P PP G PP P P F A P P +F G
Sbjct: 18 FPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPP 77
Query: 436 GXPXPPPP 413
PPPP
Sbjct: 78 QQQQPPPP 85
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 479 PPXPPXXVXFXGXGRAPXXPPXPPXXXPXP 390
PP PP G P PP PP P P
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPPPPPP 120
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 435 PSPPXKXDPXXGXGXXXXGXXPPPPAEKXGXXG 533
P+PP D G PPPPA + G G
Sbjct: 136 PTPPPSLDTGAGYAYCYSRQPPPPPAPQWGCYG 168
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = +3
Query: 429 GXPSPPXKXDPXXGXGXXXXGXXPPPPA---EKXGXXGXGXXXXXXXXPXGGXXPP 587
G P PP P G G PPPP + G G P G PP
Sbjct: 39 GYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.152 0.517
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,015
Number of Sequences: 37544
Number of extensions: 344673
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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