Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_A07
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.21
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.21
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 30 2.0
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 30 2.6
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 30 2.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.5
AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical ... 29 4.6
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 4.6
AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical ... 29 6.1
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.1
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -1
Query: 570 PXGXXXXPPXPPXXGXXVFPPGGGGXPXXXXXXPPXXGXFFXXGKGXXXPPXP 412
P PP PP G PPG G P PP F G G PP P
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMP-----PPPPPSRFGPPGMGGMPPPPP 338
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = -3
Query: 601 PPFXXGGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXP 422
PP G PP P P P + + G G P P P G G P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPP 383
Query: 421 PPP 413
PPP
Sbjct: 384 PPP 386
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/66 (30%), Positives = 21/66 (31%)
Frame = -3
Query: 610 PXXPPFXXGGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGX 431
P PP PP P P P + G G P P P G G
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGM-PGMPPPPPPSRFGPPGMGGM 333
Query: 430 PXPPPP 413
P PPPP
Sbjct: 334 PPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -1
Query: 570 PXGXXXXPPXPPXXGXXVFPPGGGGXPXXXXXXPPXXGXFFXXGKGXXXPPXP 412
P PP PP G PPG G P PP F G G PP P
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMP-----PPPPPSRFGPPGMGGMPPPPP 348
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = -3
Query: 601 PPFXXGGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXP 422
PP G PP P P P + + G G P P P G G P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPP 393
Query: 421 PPP 413
PPP
Sbjct: 394 PPP 396
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/66 (30%), Positives = 21/66 (31%)
Frame = -3
Query: 610 PXXPPFXXGGXXPPXGXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGX 431
P PP PP P P P + G G P P P G G
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGM-PGMPPPPPPSRFGPPGMGGM 343
Query: 430 PXPPPP 413
P PPPP
Sbjct: 344 PPPPPP 349
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 414 GGGGXGXPSPPXKXDPXXGXGXXXXGXXPPPPA 512
GGGG G PP P G G G PPPA
Sbjct: 23 GGGGCGCAPPPPP--PACGCGGGGGGYAAPPPA 53
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 479 PPXPPXXVXFXGXGRAPXXPPXPPXXXPXP 390
PP PP + G G P PP PP P
Sbjct: 634 PPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 479 PPXPPXXVXFXGXGRAPXXPPXPPXXXPXP 390
PP PP + G G P PP PP P
Sbjct: 460 PPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 489
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 523 PXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXPPP 416
P A GGG P P P S GG PPP
Sbjct: 180 PGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPP 215
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 523 PXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPXPPP 416
P A GGG P P P S GG PPP
Sbjct: 177 PGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPP 212
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = -1
Query: 606 VXPLFXXXAXXXPXGXXXXPPXPPXXGXXVFPPGGGGXPXXXXXXPPXXGXFFXXGKGXX 427
V P+F A P G PP PP G V PP G P F G
Sbjct: 698 VPPMFNLNAPPPP-GIPGYPPAPPPPG--VGPPPPQGIPPMGFDPNKPPPPMFQQGFNAG 754
Query: 426 XPPXP 412
PP P
Sbjct: 755 APPPP 759
>AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.14 protein.
Length = 74
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 414 GGGGXGXPSPPXKXDPXXGXGXXXXGXXPPPPAE 515
G GG P+ P +P G G PPPP +
Sbjct: 26 GAGGCCPPAQPGCGNPCQGAGPQYAAAPPPPPPQ 59
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 423 GXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXG 524
G G P+PP +P G PPPP + G
Sbjct: 226 GTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTG 259
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 423 GXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXG 524
G G P PP +P G PPPP + G
Sbjct: 39 GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTG 72
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 423 GXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXG 524
G G P PP +P G PPPP + G
Sbjct: 102 GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTG 135
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 423 GXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXG 524
G G P PP +P G PPPP + G
Sbjct: 133 GTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTG 166
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 423 GXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXG 524
G G P PP +P G PPPP + G
Sbjct: 257 GTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTG 290
>AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.15 protein.
Length = 74
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 414 GGGGXGXPSPPXKXDPXXGXGXXXXGXXPPPP 509
G GG P+ P +P G G PPPP
Sbjct: 27 GAGGCCPPAQPGCGNPCQGAGPQYAAAPPPPP 58
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +3
Query: 414 GGGGXGXPSPPXKXDPXXGXGXXXXGXXPPPPAEKXGXXGXGXXXXXXXXPXGGXXP 584
GGG P PP P G P P G G P G P
Sbjct: 178 GGGAAPRPGPPGPKGPRGAPGNSGRAGAPGQPGNDAHGYGGGVGAPGPAGPRGAPGP 234
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = -1
Query: 564 GXXXXPPXPPXXGXXVFPPGGGGXP--XXXXXXPPXXGXFFXXGKGXXXPPXPXXXXP 397
G P PP G PP GG P PP G G PP P P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = -3
Query: 601 PPFXXGGXXPPX-GXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPX 425
PP G PP G P P P GG P P P G F +G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPP----PGGCPPPPPPPPP--GGF----KGGPP 785
Query: 424 PPPP 413
PPPP
Sbjct: 786 PPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = -1
Query: 564 GXXXXPPXPPXXGXXVFPPGGGGXP--XXXXXXPPXXGXFFXXGKGXXXPPXPXXXXP 397
G P PP G PP GG P PP G G PP P P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = -3
Query: 601 PPFXXGGXXPPX-GXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPX 425
PP G PP G P P P GG P P P G F +G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPP----PGGCPPPPPPPPP--GGF----KGGPP 785
Query: 424 PPPP 413
PPPP
Sbjct: 786 PPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = -1
Query: 564 GXXXXPPXPPXXGXXVFPPGGGGXP--XXXXXXPPXXGXFFXXGKGXXXPPXPXXXXP 397
G P PP G PP GG P PP G G PP P P
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = -3
Query: 601 PPFXXGGXXPPX-GXXXXXXXXPXPXXPXFSAGGGGXXPXXXXPXPXXGSFFXGGEGXPX 425
PP G PP G P P P GG P P P G F +G P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPP----PGGCPPPPPPPPP--GGF----KGGPP 368
Query: 424 PPPP 413
PPPP
Sbjct: 369 PPPP 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.152 0.517
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,667
Number of Sequences: 27780
Number of extensions: 199936
Number of successful extensions: 807
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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