Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A06
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = -3

Query: 360 DESGARARTLPLKNGGGAGGXAPQE--LRDMKQNVACALAPSNHRLKLAVHVPSEPSEMN 187
           D +G   R L   +    G   P E  + D K  V  AL    H L + V +  +    N
Sbjct: 278 DMTGPEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQN 337

Query: 186 DPLSSHSEKR 157
           D  + H   R
Sbjct: 338 DRRTRHLSDR 347


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 721 CERRRVFTSVTHRHYKRSPGERAH 792
           CER    +   HRH +   GER H
Sbjct: 153 CERAFEHSGKLHRHMRIHTGERPH 176


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 624 PPHHPLSEPRSCCPTVAPPASHATVSDPECVGLR 725
           PP+HPLS  +  C      AS        C G +
Sbjct: 98  PPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCK 131


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 624 PPHHPLSEPRSCCPTVAPPASHATVSDPECVGLR 725
           PP+HPLS  +  C      AS        C G +
Sbjct: 98  PPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCK 131


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/58 (20%), Positives = 24/58 (41%)
 Frame = -3

Query: 225 LAVHVPSEPSEMNDPLSSHSEKRDRQKRGKSVSKTCHGLDDLHAPTSCGRSARRRPPE 52
           + +H+     E+  P     E+ + + +GK + KT       H  +S      + PP+
Sbjct: 558 MQIHISQSTKELLSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQEPPQ 615


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 777 WRTLVVAVGNRCED--SATFAAPRTQGRRQSHAKQEGRRWGNMN 652
           W  LVV +G  C+D  SA     R      +H+ +    W +++
Sbjct: 4   WLLLVVCLGIACQDVTSAAVNHQRKSANNLAHSMKVIYEWKHID 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,536
Number of Sequences: 438
Number of extensions: 3404
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)