Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_A05
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 30 0.52
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 28 1.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.6
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 4.9
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 4.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.5
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 6.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 6.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.5
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 910 FLVETFIPHXITFGYTXNLNDLRNNFYLYF 821
FLVE F+PH Y N+N +R ++ F
Sbjct: 133 FLVEPFVPHPPNTEYYININSVREGDWILF 162
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 564 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 680
L+ +H Y NLSQ +E+F + GG L + +T
Sbjct: 24 LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 527 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 706
V S+L EL++WK K + P+ESN + + ++ DN P +E+ +
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291
Query: 707 PRTDS 721
R ++
Sbjct: 292 SRDNN 296
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/42 (26%), Positives = 14/42 (33%)
Frame = -1
Query: 734 HIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFH 609
H +PW L D R+W C Y+ FH
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFH 146
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 626 KCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICV 736
KCT + N RD+Y EI R RT + IC+
Sbjct: 234 KCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICL 270
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 176 AAEPEEF-QDSGEDWTPDADSNEPASRTGRKRVSKAPVN 289
+ + EEF +DS + D+NEP+++ K V + VN
Sbjct: 237 STDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 816 YLIVLCKKSNTLSYLSLTLIRSFKS 742
YL ++SNTL LS TLIR+F +
Sbjct: 676 YLYYENRQSNTLKSLSSTLIRTFST 700
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 173 RAAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 310
+ A+ ++ D+ TP ADS EP K V+ A +++K K
Sbjct: 342 KVADEKQLPDASSQATP-ADSKEPRKEEAEKPVTSATEVSSEKVEK 386
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 743 LMLHIFPWS---LCVDCDPVFRLWGNNCHGCQHSTQN 642
L+LH F W +CV C+ F+ WG H +H TQ+
Sbjct: 394 LLLH-FVWKSALICVLCERKFQSWG---HVVKHITQS 426
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 575 LCHQFSTSSVHQVLILQYL 519
LCHQ S+S +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,078
Number of Sequences: 5004
Number of extensions: 70659
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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