Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A04
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
 Frame = +1

Query: 118 QAIKVGTKTVKPVLSSSHAEARNRVLS------LYKA----WYRQIPYIVKDY 246
           +AIKV  +T  P  +++  EA +++++      LY+     W+RQIPY +  +
Sbjct: 142 EAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTMMKF 194


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 160  SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKXVTDIRVIDM 339
            + S+AE  N  LSL K WY +   ++ D  +  S+ +C   + EL  +   VTD    ++
Sbjct: 2733 AESYAETNN--LSLIKVWYHEACRVLLDRLV--SQKECSWGMTEL--QKVIVTDFGEFEV 2786

Query: 340  LVI 348
             VI
Sbjct: 2787 SVI 2789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 931 GGGPXXQXPXPGGXGGF 881
           GGG     P PGG GGF
Sbjct: 194 GGGSGGPPPGPGGFGGF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,844
Number of Sequences: 5004
Number of extensions: 49942
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)