Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A04
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1446 + 26584117-26584329,26585799-26585981                       53   3e-07
01_06_0930 + 33134385-33138257                                         36   0.061
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155           31   1.3  
08_02_1449 - 27174451-27178005                                         30   2.3  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    30   2.3  
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448...    28   9.3  

>07_03_1446 + 26584117-26584329,26585799-26585981
          Length = 131

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 151 PVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPK--SEAQCREKLKELFIKNKXVTDI 324
           P  S+S  EAR+RV   ++   R IP I++ Y++    + +Q R  + +   KN+ VT+ 
Sbjct: 11  PPNSASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVTNP 70

Query: 325 RVIDMLVIKGQMELKESVNIWKQKGHIMAYF 417
           +VIDML+ KG  EL       KQ+ H++  +
Sbjct: 71  KVIDMLLFKGMEELGNITEHAKQRHHVIGQY 101


>01_06_0930 + 33134385-33138257
          Length = 1290

 Score = 35.5 bits (78), Expect = 0.061
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +1

Query: 181 RNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREK-----LKELFIKNKXVTDIRVIDMLV 345
           RNR+  LY+A   QIPYI K   +   +  C +K     L++L   NK   ++RV+++  
Sbjct: 673 RNRMYKLYRAALPQIPYIGKLSLLQDIDGFCVQKQKGYELRQLRDMNKLGGNLRVVNLEN 732

Query: 346 IKGQMELKES 375
           + G+ E  ES
Sbjct: 733 VTGKDEASES 742


>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
          Length = 361

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -3

Query: 474 ISREEFRKEIFWFRFFCWFEVGHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHXFVLNE 295
           I R+   +   W R     +V   V  L PY H L +L L   +QH+    +S   +LN+
Sbjct: 101 IRRQHIPRVNLWIRHIVMCKVRVLVLHLNPYCHELDELPLV--SQHLTRLELS-GLILND 157

Query: 294 EFFQFLSTL 268
            F  F S L
Sbjct: 158 SFLNFSSCL 166


>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 184 NRVLSLYKAWYRQIPYIVKDYD-----IPKSEAQCREKLKELFIKNKXVTDIRVIDMLVI 348
           N +LS+ K  YR +P  +K         PK     R+KL +L+I N  + +  ++D L  
Sbjct: 402 NEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFIQEEGMMD-LEE 460

Query: 349 KGQMELKESV 378
           +GQ    E V
Sbjct: 461 RGQFVFNELV 470


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +1

Query: 154 VLSSSHAEARNRVLSLYKAWYRQIPY----IVKDYDIPKSEAQCREKLKELFIKNKXVTD 321
           VLS+ H + R      Y  W+R  P+    ++ DY++     QC   L      N    D
Sbjct: 64  VLSTLHLQLRVEYTLYYNIWFRSYPFSICGMLWDYELKHKIFQCNYSLYAFISLNLKYND 123

Query: 322 IRVIDMLVIK 351
           I    + V+K
Sbjct: 124 IAKHALDVVK 133


>12_02_0615 +
           21242819-21243201,21244510-21244630,21244728-21244847,
           21245015-21245245,21245365-21245862
          Length = 450

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 196 SLYKAWYRQIPYIVKDYDIPKSEAQCREK 282
           SL KAW+R++P  V D   P+   QC  +
Sbjct: 205 SLIKAWFRELPEGVLDSLSPEQVLQCNSE 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,568,764
Number of Sequences: 37544
Number of extensions: 357449
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)