Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A04
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 199 LYKAWYRQIPYIVKDYDI-----PKS---EAQCREKLKELFIKNKXVTDIRVIDMLVIKG 354
           +YK++   I    KD ++     PKS   E  C  K  E+F       D   +   V KG
Sbjct: 453 MYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKG 512

Query: 355 QMELKESVN 381
           Q+ LKE  N
Sbjct: 513 QICLKEKEN 521


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 404 LWPTSNQQKNLNQKISFRNSSL 469
           +WP    Q N N   +F+NS++
Sbjct: 150 IWPFKEYQMNGNNITNFKNSNI 171


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 423 WFEVGHNVPLLFPYV 379
           ++EVG NVP  F ++
Sbjct: 310 YYEVGSNVPFNFKFI 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,529
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)