Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A03
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    37   0.005
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    34   0.032
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    32   0.13 
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    31   0.23 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    29   1.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   1.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   2.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   2.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   4.9  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   8.6  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 398 YLIRWKGYSADSDTWEPEQTLS-CPELIGKF 487
           Y IRW  YS+ SDTWEP + LS C  ++ ++
Sbjct: 27  YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 629 EYEVERILXVHHKKNGK-REFLIHWKGWSSXFDSWGT*EQPE 751
           EYEVERI+     +NG  + + I W  +SS  D+W   E PE
Sbjct: 7   EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTW---EPPE 45


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 362 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGK 484
           + D     G   Y I+W GY    +TWEPEQ L   E + K
Sbjct: 28  LADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 596 SQWDTSADENAEYEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           ++ +T AD    YEVE IL     KNG  E+ I W G+    ++W
Sbjct: 13  NEGETDADV---YEVEDILADRVNKNGINEYYIKWAGYDWYDNTW 54


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 362 ILDS--KKIKGKLHYLIRWKGYSADSD-TWEPEQTLS-CPELIGKF 487
           ILDS  KK      Y ++W+GY   SD TW  E+  + C ELI  +
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 590 AKSQWDTSADENAEYEVERILXVHH-KKNGKREFLIHWKGWSSXFD-SWGT 736
           AK +     +E  EY VE++L     +K G  E+L+ W+G+    D +W +
Sbjct: 67  AKEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSS 117



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 386 GKLHYLIRWKGYSADSD-TWEPEQTLS-CPELI 478
           G   YL++W+GY   SD TW  E   S C +LI
Sbjct: 96  GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 686 FLIHWKGWSSXFDSW 730
           +LIH+KGW + +D W
Sbjct: 36  YLIHYKGWKNSWDEW 50


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 629 EY-EVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           EY +V+RI+  H   +G  E+L+ WK     F +W
Sbjct: 286 EYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 386 GKLHYLIRWKGYSADSDTWE 445
           G + YL++WK    D  TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 383 KGKLHYLIRWKGYSADSDTWEPEQTLS 463
           K    YLI+W+  S   +TWE   TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 383 KGKLHYLIRWKGYSADSDTWE 445
           +GK  Y ++W+    D+ TWE
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWE 337


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 131  DDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNND 244
            D+D+ +    + ++ DQTA +NK  +   DES     D
Sbjct: 1847 DEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQD 1884


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 405 FAGKDILQTVILGNLSKLCLVLN*SENLMKKRRI-----LKIRNENLVL 536
           + G+  L+ ++  N+S +CLV   S+   K+R I     L+I +EN+++
Sbjct: 655 YFGRRFLEYLVKLNISVVCLVRESSDEAAKERLISLVPSLRISSENIIV 703


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 113 ISKNRTDDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDFS 253
           + +N  D++ +S+T   +    +    N+  +  TDE  + N D FS
Sbjct: 58  VEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTDEEAEDNEDTFS 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,849
Number of Sequences: 5004
Number of extensions: 41659
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)