Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A03
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical pr...    43   4e-04
Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical pr...    43   4e-04
Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical pr...    43   4e-04
AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain...    43   4e-04
AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain...    43   4e-04
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    42   5e-04
Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    39   0.004
U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    38   0.008
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    35   0.071
U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    29   4.7  
AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical...    29   4.7  
AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical...    29   4.7  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.1  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.1  

>Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical
           protein K01G5.2c protein.
          Length = 303

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++ +F
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 YEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           + VE++L     K G+ EFLI W+G+     SW
Sbjct: 19  FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSW 51


>Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical
           protein K01G5.2b protein.
          Length = 301

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++ +F
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 YEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           + VE++L     K G+ EFLI W+G+     SW
Sbjct: 19  FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSW 51


>Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical
           protein K01G5.2a protein.
          Length = 175

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++ +F
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 YEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           + VE++L     K G+ EFLI W+G+     SW
Sbjct: 19  FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSW 51


>AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 175

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++ +F
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 YEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           + VE++L     K G+ EFLI W+G+     SW
Sbjct: 19  FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSW 51


>AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 301

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++ +F
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 632 YEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           + VE++L     K G+ EFLI W+G+     SW
Sbjct: 19  FMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSW 51


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 362 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           IL+ +K KGK  + I+W GY    ++WEP++ +  P LI  F
Sbjct: 13  ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +2

Query: 614 ADENAEYEVERILXVHHKKNGKREFLIHWKGWSSXFDSW 730
           AD +  Y VE IL  H KK GK EF I W G+    +SW
Sbjct: 2   ADGSELYTVESILE-HRKKKGKSEFYIKWLGYDHTHNSW 39


>Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical
           protein T09A5.8 protein.
          Length = 339

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTL 460
           KIL  K     L   +RW GY AD DTWEPE+ L
Sbjct: 28  KILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61


>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 359 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+L+ +  +G   Y I+W+G+     +WEP + L C  +I ++
Sbjct: 41  KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 359 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELIGKF 487
           K+L+ +  +G   Y I+W+G+     +WEP + L C  +I ++
Sbjct: 41  KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83


>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 374 KKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPEL 475
           K+   K  YL+ W+GY     TWEPE+ L +C EL
Sbjct: 43  KRRHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 359 KILDSKKIKGKLHYLIRWKGYSA---DSDTWEPEQTLSCPELIGKF 487
           ++L  +K+KG   YL++WKGY     +S+ WE E   +C +L+  +
Sbjct: 91  RVLAHRKVKGSPLYLVQWKGYPHPVWNSEMWE-EDLDNCKDLLAAY 135



 Score = 34.7 bits (76), Expect = 0.094
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 611 SADENAEYEVERILXVHHKKNGKREFLIHWKGW 709
           S D + EY VER+L  H K  G   +L+ WKG+
Sbjct: 80  SDDSSGEYAVERVL-AHRKVKGSPLYLVQWKGY 111


>U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical
           protein C29H12.5 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 YLIRWKGYSADSDTWEPEQTL 460
           +L++W GY     TWEPE  +
Sbjct: 95  FLVKWLGYGNKEMTWEPESNI 115


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 131 DDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDF 250
           D+D +  T     +D  T T NKT   V DE  D + DDF
Sbjct: 27  DNDELPETEPESDSDKPTVTSNKTENQVADEDYD-SFDDF 65


>AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11b protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 647 ILXVHHKKNGKREFLIHWKGWSSXFD 724
           I+ + + + GK  + +H+KGW+  +D
Sbjct: 30  IIGIENNREGKECYCVHFKGWNCRYD 55



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 647 ILXVHHKKNGKREFLIHWKGWSSXFD 724
           I  +   K+GK  + IH+KGW++ +D
Sbjct: 251 ITDIKPDKDGKECYCIHFKGWNNRYD 276


>AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11a protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 647 ILXVHHKKNGKREFLIHWKGWSSXFD 724
           I+ + + + GK  + +H+KGW+  +D
Sbjct: 30  IIGIENNREGKECYCVHFKGWNCRYD 55



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 647 ILXVHHKKNGKREFLIHWKGWSSXFD 724
           I  +   K+GK  + IH+KGW++ +D
Sbjct: 344 ITDIKPDKDGKECYCIHFKGWNNRYD 369


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 KGKLHYLIRWKGYSADSDTWEPEQT 457
           K +  YL++WK  S D  TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 KGKLHYLIRWKGYSADSDTWEPEQT 457
           K +  YL++WK  S D  TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,795
Number of Sequences: 27780
Number of extensions: 230787
Number of successful extensions: 607
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)