Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P24.2
(1205 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457211-1|CAG33492.1| 615|Homo sapiens LMO6 protein. 48 9e-05
BT007423-1|AAP36091.1| 615|Homo sapiens LIM domain only 6 protein. 48 9e-05
BC016856-1|AAH16856.1| 615|Homo sapiens LIM domain only 6 protein. 48 9e-05
BC002468-1|AAH02468.1| 615|Homo sapiens LIM domain only 6 protein. 48 9e-05
AJ011654-1|CAA09726.1| 615|Homo sapiens triple LIM domain prote... 48 9e-05
BC001451-1|AAH01451.1| 421|Homo sapiens testis derived transcri... 39 0.042
AK021575-1|BAB13846.1| 421|Homo sapiens protein ( Homo sapiens ... 39 0.042
AJ250865-1|CAB65119.1| 421|Homo sapiens TESS 2 protein. 39 0.042
AF260225-2|AAG17636.1| 412|Homo sapiens TESTIN 3 protein. 39 0.042
AF260225-1|AAG17635.1| 421|Homo sapiens TESTIN 2 protein. 39 0.042
AF245357-1|AAG17613.1| 412|Homo sapiens TESTIN 3 protein. 39 0.042
AF245356-1|AAG17612.1| 421|Homo sapiens TESTIN 2 protein. 39 0.042
AC073130-1|AAQ93367.1| 421|Homo sapiens unknown protein. 39 0.042
BC000646-1|AAH00646.1| 365|Homo sapiens LIM and cysteine-rich d... 38 0.055
AK022176-1|BAB13976.1| 365|Homo sapiens protein ( Homo sapiens ... 38 0.055
AF216709-1|AAG36778.1| 365|Homo sapiens dyxin protein. 38 0.055
AF169284-1|AAF34411.1| 365|Homo sapiens LIM and cysteine-rich d... 38 0.055
AK222840-1|BAD96560.1| 421|Homo sapiens testin isoform 1 varian... 33 1.6
>CR457211-1|CAG33492.1| 615|Homo sapiens LMO6 protein.
Length = 615
Score = 47.6 bits (108), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSVY 495
C++C E CPGF+ H WRK + C C R +H+V+
Sbjct: 27 CNSCREQCPGFLLHGWRKICQHCKCPREEHAVH 59
>BT007423-1|AAP36091.1| 615|Homo sapiens LIM domain only 6 protein.
Length = 615
Score = 47.6 bits (108), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSVY 495
C++C E CPGF+ H WRK + C C R +H+V+
Sbjct: 27 CNSCREQCPGFLLHGWRKICQHCKCPREEHAVH 59
>BC016856-1|AAH16856.1| 615|Homo sapiens LIM domain only 6 protein.
Length = 615
Score = 47.6 bits (108), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSVY 495
C++C E CPGF+ H WRK + C C R +H+V+
Sbjct: 27 CNSCREQCPGFLLHGWRKICQHCKCPREEHAVH 59
>BC002468-1|AAH02468.1| 615|Homo sapiens LIM domain only 6 protein.
Length = 615
Score = 47.6 bits (108), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSVY 495
C++C E CPGF+ H WRK + C C R +H+V+
Sbjct: 27 CNSCREQCPGFLLHGWRKICQHCKCPREEHAVH 59
>AJ011654-1|CAA09726.1| 615|Homo sapiens triple LIM domain protein
protein.
Length = 615
Score = 47.6 bits (108), Expect = 9e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSVY 495
C++C E CPGF+ H WRK + C C R +H+V+
Sbjct: 27 CNSCREQCPGFLLHGWRKICQHCKCPREEHAVH 59
>BC001451-1|AAH01451.1| 421|Homo sapiens testis derived transcript
(3 LIM domains) protein.
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>AK021575-1|BAB13846.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ11513 fis, clone HEMBA1002215, highly similar to
TESTIN 2 (TES2) [CONTAINS: TESTIN 1 (TES1)]. ).
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>AJ250865-1|CAB65119.1| 421|Homo sapiens TESS 2 protein.
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>AF260225-2|AAG17636.1| 412|Homo sapiens TESTIN 3 protein.
Length = 412
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 13 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 44
>AF260225-1|AAG17635.1| 421|Homo sapiens TESTIN 2 protein.
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>AF245357-1|AAG17613.1| 412|Homo sapiens TESTIN 3 protein.
Length = 412
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 13 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 44
>AF245356-1|AAG17612.1| 421|Homo sapiens TESTIN 2 protein.
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>AC073130-1|AAQ93367.1| 421|Homo sapiens unknown protein.
Length = 421
Score = 38.7 bits (86), Expect = 0.042
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H WRK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFWRKICRNCKCGQEEHDV 53
>BC000646-1|AAH00646.1| 365|Homo sapiens LIM and cysteine-rich
domains 1 protein.
Length = 365
Score = 38.3 bits (85), Expect = 0.055
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKH 486
C C C GF H+WRK KSC C + H
Sbjct: 28 CLGCKGTCSGFEPHSWRKICKSCKCSQEDH 57
>AK022176-1|BAB13976.1| 365|Homo sapiens protein ( Homo sapiens
cDNA FLJ12114 fis, clone MAMMA1000055, weakly similar to
TESTIN 2 (TES2) [CONTAINS: TESTIN 1 (TES1)]. ).
Length = 365
Score = 38.3 bits (85), Expect = 0.055
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKH 486
C C C GF H+WRK KSC C + H
Sbjct: 28 CLGCKGTCSGFEPHSWRKICKSCKCSQEDH 57
>AF216709-1|AAG36778.1| 365|Homo sapiens dyxin protein.
Length = 365
Score = 38.3 bits (85), Expect = 0.055
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKH 486
C C C GF H+WRK KSC C + H
Sbjct: 28 CLGCKGTCSGFEPHSWRKICKSCKCSQEDH 57
>AF169284-1|AAF34411.1| 365|Homo sapiens LIM and cysteine-rich
domains protein 1 protein.
Length = 365
Score = 38.3 bits (85), Expect = 0.055
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKH 486
C C C GF H+WRK KSC C + H
Sbjct: 28 CLGCKGTCSGFEPHSWRKICKSCKCSQEDH 57
>AK222840-1|BAD96560.1| 421|Homo sapiens testin isoform 1 variant
protein.
Length = 421
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 397 CDNCPELCPGFVSHAWRKTXKSCGCDRLKHSV 492
C C E C GF H RK ++C C + +H V
Sbjct: 22 CLKCKEKCEGFELHFCRKICRNCKCGQEEHDV 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,472,815
Number of Sequences: 237096
Number of extensions: 1355820
Number of successful extensions: 2504
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2504
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17009285070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -