Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P24.2
         (1205 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    36   0.043
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    29   6.6  

>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 36.3 bits (80), Expect = 0.043
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 376 EVSEXXXCDNCPEL-CPGFVSHAWRKTXKSCGCDRLKHSV 492
           ++ +   C N P   C G   H WRK  K+CGC   +H V
Sbjct: 35  DIGQGSQCRNLPTCRCEGLDLHFWRKMCKNCGCRMDEHDV 74


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
            protein Y39B6A.18 protein.
          Length = 1352

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 309  VSRDXQSNKTTDQSDATKLFHGHLWNTL-SNSNIGGQTANVFCKRETKRXXTLNLIDDFM 133
            ++R  +++ T + ++A K  H H WN + +NS +   T     +   +    + + D  M
Sbjct: 1243 LARQVEADPTIELTEALKHLHEHRWNGVQTNSQLYWMTLGTMYRLIKEYGFDMKIYDQQM 1302

Query: 132  QLFAD 118
             +F D
Sbjct: 1303 AMFND 1307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,253,277
Number of Sequences: 27780
Number of extensions: 226069
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3318157644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)