Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P24.2
         (1205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   2.3  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 381 YFFYPHTRLRKCTFRPSGWSSIHPVSRDXQSNKTTDQS 268
           Y  Y HT  +K     S   S  P SRD  +   T ++
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKT 104


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 350 NAPFGLLVGVPFILSPVXNNQTKRPTNRMPQNFFTDT 240
           N  F +L G  F++       T RPT ++  ++ TDT
Sbjct: 700 NVQFSVLYG--FVIIECQEPVTNRPTGQLLLDYLTDT 734


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,519
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)