Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P23.2
         (1226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    55   2e-08
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   4.0  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   5.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   7.0  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   7.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   7.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   9.3  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
 Frame = +2

Query: 362 RIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILI 541
           ++K+IL   +  PL   V I +W I + DR L++P+      P   +  +H     + LI
Sbjct: 17  KLKNILLYIVC-PLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLI 75

Query: 542 DLLTSFRMYPRKKIGLSVL--CTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYL 715
           D L  F       IG S+L   +  + YM+W+   Y     + YPIL IL+   + +FY 
Sbjct: 76  DYL-FFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYT 134

Query: 716 VCLGLVCSLY 745
           V   +  S Y
Sbjct: 135 VASIISFSCY 144


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +2

Query: 368 KDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILIDL 547
           K ILFS L F   +++   FW +      L+       YFP W  H+  +   A IL +L
Sbjct: 273 KQILFSLLYFSSEVYLSFVFWSVLTSLGLLVW------YFPLW--HMGISGYEACILFEL 324


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 432 PQNVIPTNIDSGKAKALNNISFMRLIKGFSDGVGSLFPNKSFKSANVKYK 283
           PQ+ I   +D+ +A+   +      +K   D  GSL  + +FK A   Y+
Sbjct: 32  PQSPIKVFMDTFRAELKKSQELQDSVKALQDSSGSLSESDTFKKARDAYE 81


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 458 ILPRSLDPYFPTWLNHVMHTNIMAFILIDLLTSFRMYPRKKIGLSVLCTYMLCYMVWIHV 637
           I+ + ++ YF    N +     + F L   L+S   +   KI    +  +    +++IH+
Sbjct: 356 IVEKFMNVYFKGLSNIISSFAFIGFTLFATLSSL-FFKVLKIHRRPIIVFGSLSIIFIHI 414

Query: 638 IYFKTGSWVYPILNILNW 691
             FK  SWV    N+  W
Sbjct: 415 YCFKITSWV----NLYGW 428


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 410 FVGITFWGIYAIDRELILPRSLD 478
           ++  TFW IY +   LILP SLD
Sbjct: 317 YITSTFWIIYLLYVWLILPESLD 339


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 644 FKTGSWVYPILNILNWPLRVVFYL 715
           F  GSW  P+LN L++P   V +L
Sbjct: 293 FVLGSWKSPLLNALHYPFPSVGFL 316


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 524 MAFILIDLLTS-FRMYPRKKIGLSVLCTYMLCYMVWIHVIYF 646
           + FI+  +L+  F++     + LS LCT+  C M  I + YF
Sbjct: 469 LVFIVSVILSIYFQLGSTYWVTLSYLCTFTCCIMTIIRINYF 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,110,586
Number of Sequences: 5004
Number of extensions: 81408
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)