Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P22.2
         (1288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    42   0.001
07_03_1433 + 26513728-26514135,26525534-26526280                       30   3.4  
07_01_0479 + 3606663-3607448                                           30   4.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   4.5  
04_03_0904 + 20717005-20718087                                         29   6.0  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   7.9  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 42/154 (27%), Positives = 42/154 (27%), Gaps = 2/154 (1%)
 Frame = -1

Query: 1195 PXXGXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXP--GXXXG 1022
            P  G  G    PP  G   P P    PP  G    PP  P G          P      G
Sbjct: 1090 PTLGDYGVAPPPPSIGAGAPPP---PPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIG 1146

Query: 1021 GXPXGXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXGXXXAX 842
            G P     G   G    P   PP    G        GG  P   PP        G     
Sbjct: 1147 GVPPPPPVGGLGGPPAPP---PPAGFRGGTPPPNAHGGVAP--PPPPPRGHGGVGGPPTP 1201

Query: 841  XXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRG 740
                     P   G P  PP G   P P P  RG
Sbjct: 1202 PGAPAPPMPPGVPGGPPPPPGGRGLPAP-PGGRG 1234


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = -3

Query: 788 PPLXXXKPLPPTXXPGXXXXXAXXRXXXPKPNPXSPGXGRXXXXXKTXPPXP 633
           PP     P PP+  P             P P P SP          T PP P
Sbjct: 28  PPTPITYPSPPSLSPSMPPTYPPPSSTPPSPAPVSPSPPTTYPPPSTTPPNP 79


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 20/73 (27%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPG 983
            PP      P P    P         P  P G          P     G P G   G  PG
Sbjct: 176  PPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPG 235

Query: 982  XXXXP--XGFPPP 950
                P   G PPP
Sbjct: 236  MPPPPFRPGMPPP 248


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -1

Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXP 1013
            PPP     P P    PP       PP  P            PG   GG P
Sbjct: 329  PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378



 Score = 29.5 bits (63), Expect = 6.0
 Identities = 21/98 (21%), Positives = 23/98 (23%)
 Frame = +3

Query: 894  PXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXPGXXXXXXXXXXP 1073
            P  P PP        P              P   P   P   PP   P           P
Sbjct: 311  PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370

Query: 1074 XGEXGGXXXXPXXGGXXXXGXGXXXPXGGGXXKXPXXP 1187
             G+ GG    P  GG          P G    +    P
Sbjct: 371  GGKKGGPPPPPPKGGASRPPAAPGVPTGSADQQAKLKP 408


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 22/75 (29%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
 Frame = -3

Query: 824 PGXPPIXXXTXXP-PLXXXKPLPPTXXPGXXXXXAXXRXXXPKPNPXSPGXGRXXXXXKT 648
           P  PP       P P    KP PPT  P             PKP P            K 
Sbjct: 224 PNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKP 283

Query: 647 XP-PXPXTXXXKXXP 606
            P P P T   K  P
Sbjct: 284 TPTPTPYTPTPKPNP 298


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 25/99 (25%), Positives = 26/99 (26%)
 Frame = +3

Query: 900  GPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXPGXXXXXXXXXXPXG 1079
            G  PP        P    G    G  + P         G P     G          P G
Sbjct: 105  GARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGG-GGAPRRVLGGGGGGGALARPPGG 163

Query: 1080 EXGGXXXXPXXGGXXXXGXGXXXPXGGGXXKXPXXPXXG 1196
              GG    P  GG    G G   P GGG    P     G
Sbjct: 164  GRGGALGRPPGGGGGGGGPG-RAPGGGGGGGGPGRAPGG 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,040,797
Number of Sequences: 37544
Number of extensions: 406982
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4004040288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)