Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P22.2
(1288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 39 0.009
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.062
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.062
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.062
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 35 0.14
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 1.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 1.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 2.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 4.1
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 5.4
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 9.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 9.4
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 38.7 bits (86), Expect = 0.009
Identities = 43/176 (24%), Positives = 45/176 (25%), Gaps = 5/176 (2%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P PP G P +P G P
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG--PFNPSGAPPSGGPPG-PFDPS 368
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G P G PP P
Sbjct: 369 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 428
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A P P G NP P GP +G P P P
Sbjct: 429 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP 484
Score = 38.3 bits (85), Expect = 0.012
Identities = 41/170 (24%), Positives = 42/170 (24%), Gaps = 2/170 (1%)
Frame = -1
Query: 1186 GXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXG 1007
G G PP G P PP G P P G P G P G
Sbjct: 183 GPFGPSGAPPSGGPPGPFNPSEAPPSGGPTG--PFDPSGAPPSGGPPG-PFNPSGAPPSG 239
Query: 1006 XXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXXXAXXXX 833
G P G PP G G P G PP P A
Sbjct: 240 GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 299
Query: 832 XFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
P P G NP P GP +G P P P
Sbjct: 300 GPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 349
Score = 38.3 bits (85), Expect = 0.012
Identities = 43/176 (24%), Positives = 44/176 (25%), Gaps = 5/176 (2%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P PP G P P G P
Sbjct: 357 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG--PFDPSGAPPSGGPPG-PFNPS 413
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G P G PP P
Sbjct: 414 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 473
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A P P G NP P GP +G P P P
Sbjct: 474 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGMPPVP 529
Score = 37.9 bits (84), Expect = 0.015
Identities = 43/176 (24%), Positives = 44/176 (25%), Gaps = 5/176 (2%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P PP G P P G P
Sbjct: 267 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG--PFDPSGAQPSGGPPG-PFNPS 323
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G P G PP P
Sbjct: 324 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 383
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A P P G NP P GP +G P P P
Sbjct: 384 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP 439
Score = 37.9 bits (84), Expect = 0.015
Identities = 43/176 (24%), Positives = 44/176 (25%), Gaps = 5/176 (2%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P PP G P P G P
Sbjct: 327 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG--PFDPSGAPPSGGPPG-PFDPS 383
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G P G PP P
Sbjct: 384 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 443
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A P P G NP P GP +G P P P
Sbjct: 444 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 499
Score = 35.5 bits (78), Expect = 0.082
Identities = 44/174 (25%), Positives = 46/174 (26%), Gaps = 3/174 (1%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P PP G P P PG
Sbjct: 222 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGG-----PPGPFNPSGAPPSGGPPGPFD 276
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXGXXXA 845
P G P P G PP F G P G PP PF G +
Sbjct: 277 ---PSGAPPSGGPPGPFDPSGAPPSGGPPGPF---DPSGAQPSGGPPG--PFNPSGAPPS 328
Query: 844 XXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
P P P G NP P GP +G P P P
Sbjct: 329 GGPP--GPFDPS-GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 379
Score = 34.3 bits (75), Expect = 0.19
Identities = 42/176 (23%), Positives = 44/176 (25%), Gaps = 5/176 (2%)
Frame = -1
Query: 1195 PXXGXXGXFXX---PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXX 1025
P G G F PP G P P G P +P G P
Sbjct: 282 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPG--PFNPSGAPPSGGPPG-PFDPS 338
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G P G PP P
Sbjct: 339 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 398
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A P P G NP P GP +G P P P
Sbjct: 399 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP 454
Score = 33.9 bits (74), Expect = 0.25
Identities = 29/116 (25%), Positives = 31/116 (26%), Gaps = 2/116 (1%)
Frame = -1
Query: 1024 GGXPXGXXXGXXPGXXXXPXGFPPPXXX--GXXFFXXXSGGXGPXGKPPXXXPFXXXGXX 851
G P G G P G PP G G GP G PP P
Sbjct: 144 GAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPS 203
Query: 850 XAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
A + P P G NP P GP +G P P P
Sbjct: 204 EAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 259
Score = 29.1 bits (62), Expect = 7.1
Identities = 26/104 (25%), Positives = 26/104 (25%), Gaps = 2/104 (1%)
Frame = +3
Query: 858 PXXXKGXXXGGFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXP 1037
P G G P GP P P G NP G G P G PP P
Sbjct: 379 PFDPSGAPPSGGPPGPFDPSGAPPSGGPP--GPFNPSGAPPSGGPPGPFNPSGAPPSGGP 436
Query: 1038 GXXXXXXXXXXPXGEXG--GXXXXPXXGGXXXXGXGXXXPXGGG 1163
G G P GG P GG
Sbjct: 437 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGG 480
Score = 28.7 bits (61), Expect = 9.4
Identities = 38/160 (23%), Positives = 40/160 (25%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPG 983
PP G P PP G P G G P G P
Sbjct: 146 PPSGGPPGPFDPSGAPPSGG--------PPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPP 197
Query: 982 XXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXGXXXAXXXXXFSRXXPRFX 803
P PP F G P G PP PF G + P
Sbjct: 198 GPFNPSEAPPSGGPTGPF---DPSGAPPSGGPPG--PFNPSGAPPSGGPP--GPFDPS-G 249
Query: 802 GXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
P P G NP P GP +G P P P
Sbjct: 250 APPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 289
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 858 PXXXKGXXXGGFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXP 1037
P G G P GP P P G NP G G P G PP P
Sbjct: 229 PFNPSGAPPSGGPPGPFDPSGAPPSGGPP--GPFNPSGAPPSGGPPGPFDPSGAPPSGGP 286
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 858 PXXXKGXXXGGFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXP 1037
P G G P GP P P G NP G G P G PP P
Sbjct: 289 PFDPSGAPPSGGPPGPFDPSGAQPSGGPP--GPFNPSGAPPSGGPPGPFDPSGAPPSGGP 346
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 858 PXXXKGXXXGGFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXP 1037
P G G P GP P P G NP G G P G PP P
Sbjct: 319 PFNPSGAPPSGGPPGPFDPSGAPPSGGPP--GPFNPSGAPPSGGPPGPFDPSGAPPSGGP 376
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.9 bits (79), Expect = 0.062
Identities = 41/185 (22%), Positives = 44/185 (23%)
Frame = -1
Query: 1231 GGXXXXFXXXRXPXXGXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXX 1052
GG F + G G PP P P PP G PP G
Sbjct: 209 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 268
Query: 1051 XXXXPGXXXGGXPXGXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXP 872
P G P G P PPP G G PP
Sbjct: 269 TGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPP---- 322
Query: 871 FXXXGXXXAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPT 692
G R P PP G P P GPG + + P
Sbjct: 323 --PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP-PTGRPPRGGPGKSSEESSESREGPR 379
Query: 691 PXPXG 677
P G
Sbjct: 380 GGPRG 384
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.9 bits (79), Expect = 0.062
Identities = 41/185 (22%), Positives = 44/185 (23%)
Frame = -1
Query: 1231 GGXXXXFXXXRXPXXGXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXX 1052
GG F + G G PP P P PP G PP G
Sbjct: 230 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 289
Query: 1051 XXXXPGXXXGGXPXGXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXP 872
P G P G P PPP G G PP
Sbjct: 290 TGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPP---- 343
Query: 871 FXXXGXXXAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPT 692
G R P PP G P P GPG + + P
Sbjct: 344 --PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP-PTGRPPRGGPGKSSEESSESREGPR 400
Query: 691 PXPXG 677
P G
Sbjct: 401 GGPRG 405
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.9 bits (79), Expect = 0.062
Identities = 41/185 (22%), Positives = 44/185 (23%)
Frame = -1
Query: 1231 GGXXXXFXXXRXPXXGXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXX 1052
GG F + G G PP P P PP G PP G
Sbjct: 215 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 274
Query: 1051 XXXXPGXXXGGXPXGXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXP 872
P G P G P PPP G G PP
Sbjct: 275 TGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPP---- 328
Query: 871 FXXXGXXXAXXXXXFSRXXPRFXGXPXXPPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPT 692
G R P PP G P P GPG + + P
Sbjct: 329 --PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP-PTGRPPRGGPGKSSEESSESREGPR 385
Query: 691 PXPXG 677
P G
Sbjct: 386 GGPRG 390
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 34.7 bits (76), Expect = 0.14
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Frame = -1
Query: 1171 FXXPPPXGXXXPXPXXXXPPXXGXXXXPPXS-PXGXXXXXXXXXXPGXXXGGXPXGXXXG 995
F P P P P P G PP S P G GG G
Sbjct: 356 FHAPSPQSFGGPPPPVSSAP--GNFAPPPQSGPPGAFAPPPSAFGAPQGPGGP--GGYGP 411
Query: 994 XXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXP 872
PG P + PP F GG G G PP P
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFP 452
Score = 31.9 bits (69), Expect = 1.0
Identities = 25/94 (26%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Frame = -1
Query: 1195 PXXGXXGXFXXPP---PXGXXXPXPXXXXPPXX-----GXXXXPPXSPXGXXXXXXXXXX 1040
P G F PP P G P P P G PP P
Sbjct: 370 PVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGG 429
Query: 1039 PGXXXGGXPXGXXXGXXPGXXXXPXGFPPPXXXG 938
PG P G P P G PPP G
Sbjct: 430 PGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAG 463
Score = 31.1 bits (67), Expect = 1.8
Identities = 27/98 (27%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Frame = -1
Query: 1171 FXXPPPXGXXXPXPXXXXPPXXGXXXX--PPXSPXGXXXXXXXXXXPGXXXGGXPXGXXX 998
F PPP P PP G PP S G G G P
Sbjct: 364 FGGPPPPVSSAPG-NFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGS 422
Query: 997 GXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKPP 884
P P GF PP G + G P G PP
Sbjct: 423 YGPP--QGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458
Score = 29.1 bits (62), Expect = 7.1
Identities = 40/171 (23%), Positives = 41/171 (23%), Gaps = 8/171 (4%)
Frame = -1
Query: 1171 FXXPPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGX 992
F PPP G P P P G G GG P G
Sbjct: 293 FGGPPPSGPPSEYGGYAPPQQQQQQFGAPP-PQGAPQQGFGAPPQGPPQGGPPQGSFGAP 351
Query: 991 XPGXXXXPX----GFPPPXXXGXXFFXXXSGGXGPXGK--PPXXXPFXXXGXXXAXXXXX 830
P P G PPP GP G PP P
Sbjct: 352 PPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPP---PSAFGAPQGPGGPGG 408
Query: 829 FSRXXPRFXGXPXX--PPXGXXNPFPXPXXRGPGXXXXGNGXXPQNPTPXP 683
+ P G P PP G F P GPG P P P
Sbjct: 409 YGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPP 459
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 1.0
Identities = 31/106 (29%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXG--GXPXGXXXGXX 989
PPP P P PP G PP P PG G G P G
Sbjct: 264 PPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPPPPP 321
Query: 988 PGXXXXP--XGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXG 857
P P G PPP G + GG P PP P G
Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRY----PGGMPP--PPPPRYPSAGPG 361
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 1.0
Identities = 31/106 (29%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXG--GXPXGXXXGXX 989
PPP P P PP G PP P PG G G P G
Sbjct: 274 PPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPPPPP 331
Query: 988 PGXXXXP--XGFPPPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXG 857
P P G PPP G + GG P PP P G
Sbjct: 332 PSRFGPPGMGGMPPPPPPGMRY----PGGMPP--PPPPRYPSAGPG 371
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 2.3
Identities = 29/111 (26%), Positives = 31/111 (27%), Gaps = 2/111 (1%)
Frame = +3
Query: 699 FWGXXPXPXXXXPGPRXXGXGK--GFXXPQGGXXGXPXNRGXXREKXXXQXAXKXPXXXK 872
F G P P P P G GF GG P + P
Sbjct: 1505 FRGGPPGPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQNRGPPMGGLPPPHG 1564
Query: 873 GXXXGGFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPP 1025
G G+ GP PP P GG P P P P G PP
Sbjct: 1565 GM--NGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPP--PPNGGPP 1611
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXG-XXP 986
P G P P PP G PP P G PG GG P G P
Sbjct: 737 PITGGPPPPPPPGGLPPISGG-PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 985 GXXXXPXGFPP 953
P PP
Sbjct: 796 MAPVIPDYLPP 806
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPG 983
PP G P P P PP P G P GG P G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 982 XXXXPXGFPPP 950
P PPP
Sbjct: 780 FKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXG-XXP 986
P G P P PP G PP P G PG GG P G P
Sbjct: 737 PITGGPPPPPPPGGLPPISGG-PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 985 GXXXXPXGFPP 953
P PP
Sbjct: 796 MAPVIPDYLPP 806
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPG 983
PP G P P P PP P G P GG P G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 982 XXXXPXGFPPP 950
P PPP
Sbjct: 780 FKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXG-XXP 986
P G P P PP G PP P G PG GG P G P
Sbjct: 320 PITGGPPPPPPPGGLPPISGG-PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Query: 985 GXXXXPXGFPP 953
P PP
Sbjct: 379 MAPVIPDYLPP 389
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -1
Query: 1162 PPPXGXXXPXPXXXXPPXXGXXXXPPXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPG 983
PP G P P P PP P G P GG P G
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Query: 982 XXXXPXGFPPP 950
P PPP
Sbjct: 363 FKGGPPPPPPP 373
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical protein
C09G5.5 protein.
Length = 317
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/101 (24%), Positives = 25/101 (24%), Gaps = 1/101 (0%)
Frame = -1
Query: 1186 GXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXP-PXSPXGXXXXXXXXXXPGXXXGGXPX 1010
G G P G P P G P P P G PG
Sbjct: 137 GAPGPAGAPGNPGPQGPNGNPGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQS 196
Query: 1009 GXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXGKP 887
G PG P PP G G GP G P
Sbjct: 197 GQRSRGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGPP 237
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein 114
protein.
Length = 321
Score = 29.5 bits (63), Expect = 5.4
Identities = 28/101 (27%), Positives = 28/101 (27%)
Frame = +3
Query: 738 GPRXXGXGKGFXXPQGGXXGXPXNRGXXREKXXXQXAXKXPXXXKGXXXGGFPXGPXPPX 917
GP KG Q G G P G K Q P G P P PP
Sbjct: 199 GPNGEPGPKG-PPGQPGADGQPGMPGEPG-KDAPQEGSPVPGDPGPPGDSGIPGPPGPPG 256
Query: 918 XXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXPG 1040
P G G PG P G PP S G
Sbjct: 257 MAGPDGIPGMGGAKGQNGPDGPPGASGESGPNG-PPGSGGG 296
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical protein
C15A11.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 7.1
Identities = 24/99 (24%), Positives = 24/99 (24%), Gaps = 1/99 (1%)
Frame = -1
Query: 1186 GXXGXFXXPPPXGXXXPXPXXXXPPXXGXXXXP-PXSPXGXXXXXXXXXXPGXXXGGXPX 1010
G G P G P P G P P P G PG
Sbjct: 139 GLPGPAGAPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKS 198
Query: 1009 GXXXGXXPGXXXXPXGFPPPXXXGXXFFXXXSGGXGPXG 893
G PG P PP G G GP G
Sbjct: 199 GQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAPGPAGPPG 237
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 9.4
Identities = 33/142 (23%), Positives = 33/142 (23%), Gaps = 2/142 (1%)
Frame = -1
Query: 1132 PXXXXPPXXGXXXXP-PXSPXGXXXXXXXXXXPGXXXGGXPXGXXXGXXPGXXXXPXGFP 956
P P G P P P G P P G P G P
Sbjct: 149 PPPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTP 208
Query: 955 PPXXXGXXFFXXXSGGXGPXGKPPXXXPFXXXGXXXAXXXXXFSRXXPRFXGXPXXP-PX 779
P G GP G P P G P G P P P
Sbjct: 209 GPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPT--------AAPGAAGPPGPPGPA 260
Query: 778 GXXNPFPXPXXRGPGXXXXGNG 713
G P P GP G G
Sbjct: 261 GAPGPDGNPGTAGPPGKAGGEG 282
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical protein
C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.4
Identities = 38/157 (24%), Positives = 39/157 (24%), Gaps = 6/157 (3%)
Frame = +3
Query: 735 PGPRXXGXGKGFXXPQG--GXXGXPXNRGXXREKXXXQXAXKXPXXXKGXXXGGFPXGPX 908
PGP KG G G G P G + Q K P G G P P
Sbjct: 96 PGPPGASGDKGHDGQPGQAGKPGQPGVAGPSHHQK--QECIKCPQGLPGP--AGVPGQPG 151
Query: 909 PPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXP--PXSXPGXXXXXXXXXXPXGE 1082
P P GG P G G G P P S P G
Sbjct: 152 PKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGA 211
Query: 1083 XG--GXXXXPXXGGXXXXGXGXXXPXGGGXXKXPXXP 1187
G G P G P G P P
Sbjct: 212 PGPQGPPGAPGQPGSGNAPGPAGPPGPAGPNGQPGHP 248
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 9.4
Identities = 22/97 (22%), Positives = 22/97 (22%)
Frame = +3
Query: 888 GFPXGPXPPXXXXKXXXPXXXGGGNPXGXXKXPGXXPXXXPXGXPPXSXPGXXXXXXXXX 1067
G P P PP G G PG P G P PG
Sbjct: 208 GSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDG 267
Query: 1068 XPXGEXGGXXXXPXXGGXXXXGXGXXXPXGGGXXKXP 1178
G P G G P G G P
Sbjct: 268 SGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGP 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,455,434
Number of Sequences: 27780
Number of extensions: 357108
Number of successful extensions: 783
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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