Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P20.2
(1235 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 110 8e-23
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 106 1e-21
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 89 3e-16
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 82 3e-14
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 80 1e-13
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 76 2e-12
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 75 3e-12
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 73 1e-11
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 71 5e-11
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 70 1e-10
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 68 6e-10
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 67 1e-09
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 60 1e-07
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 60 1e-07
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 55 3e-06
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 55 3e-06
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 54 8e-06
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 51 5e-05
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 51 7e-05
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 49 3e-04
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 49 3e-04
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 46 0.002
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 45 0.005
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 42 0.043
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.17
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 39 0.31
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 38 0.70
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 38 0.70
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.93
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 37 0.93
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 36 1.6
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 2.2
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 36 2.8
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 35 5.0
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 5.0
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 35 5.0
UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;... 34 6.6
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 6.6
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 6.6
UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 8.7
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 8.7
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 110 bits (264), Expect = 8e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 106 bits (254), Expect = 1e-21
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK +RE
Sbjct: 10 VGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPERE 69
Query: 300 XKRTLGFVLLRGENIVSLTI 359
KR LG VLLRGEN+VS+T+
Sbjct: 70 EKRVLGLVLLRGENLVSMTV 89
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 88.6 bits (210), Expect = 3e-16
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +3
Query: 123 GKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREX 302
GKN +QQ L VRV ++ R F+GTF AFDKHM L+L C FR K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 303 KRTLGFVLLRGENIVSLT 356
KRTLGF++LRGENIVS T
Sbjct: 63 KRTLGFIMLRGENIVSFT 80
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 82.2 bits (194), Expect = 3e-14
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKI---KSKNSK 284
M + K++ + Q +N +RV +Q R IG F AFD+HM L+LG C FRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 285 TADREXKRTLGFVLLRGENIVSLTI 359
+RE +RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 79.8 bits (188), Expect = 1e-13
Identities = 43/81 (53%), Positives = 51/81 (62%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
MP GKN +Q L VRV L+ +R F+GT A+DK+M L+L C FR K+
Sbjct: 1 MP-GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRT- 58
Query: 294 REXKRTLGFVLLRGENIVSLT 356
E KRTLGFVLLRGENIVS T
Sbjct: 59 -EVKRTLGFVLLRGENIVSFT 78
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 75.8 bits (178), Expect = 2e-12
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GKN+ L+ L VRV + +R F+GTF ++D+HM ++L FRK+KS+ + +E
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL--KE 58
Query: 300 XKRTLGFVLLRGENIVSLT 356
KR +G +L+RGENIVS T
Sbjct: 59 IKRVVGLILIRGENIVSFT 77
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 75.4 bits (177), Expect = 3e-12
Identities = 33/78 (42%), Positives = 53/78 (67%)
Frame = +3
Query: 126 KNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXK 305
K++ + Q++N +RV +Q R +G F AFDKHM +++ FR+I+ K + DRE K
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKE--DREEK 63
Query: 306 RTLGFVLLRGENIVSLTI 359
RTLG +L+RGE +VS+++
Sbjct: 64 RTLGMILIRGETVVSMSV 81
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 73.3 bits (172), Expect = 1e-11
Identities = 35/68 (51%), Positives = 42/68 (61%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ R LQ R FIG FKAFDKHM IL C FRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 294 REXKRTLG 317
E KR G
Sbjct: 61 CEEKRVFG 68
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 71.3 bits (167), Expect = 5e-11
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GKN L+ L VRV + +R ++GTF ++D+HM ++L FR++K+K + +E
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNF--KE 58
Query: 300 XKRTLGFVLLRGENIVSLT 356
KR +G +L+RG+NIVS T
Sbjct: 59 IKRVVGLILIRGDNIVSFT 77
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 70.1 bits (164), Expect = 1e-10
Identities = 34/66 (51%), Positives = 43/66 (65%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GK++ + H + +R ILQ R FIGTFKAFDKHM +I C FRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 300 XKRTLG 317
KR G
Sbjct: 103 EKRVSG 108
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 67.7 bits (158), Expect = 6e-10
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
+Q+++N +RV +Q R +G AFD+HM L+L C +R++K +E KR+LG
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEE---PKELKRSLG 57
Query: 318 FVLLRGENIVS 350
++LRGENIV+
Sbjct: 58 LIMLRGENIVT 68
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 66.9 bits (156), Expect = 1e-09
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIK 269
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 60.1 bits (139), Expect = 1e-07
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +3
Query: 144 QHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFV 323
Q ++ VR+ L R +GTF AFDKH+ +IL C +R + + E KRTLG +
Sbjct: 9 QWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR---IRKQGIHEIETKRTLGMI 65
Query: 324 LLRGENIVSLT 356
++RG+NI+SL+
Sbjct: 66 IVRGDNIISLS 76
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 60.1 bits (139), Expect = 1e-07
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 150 LNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKN-SKTADREXKRTLGFVL 326
LN + V + RTF+G AFD M L+L C +R IK +N + E KR LG V+
Sbjct: 10 LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69
Query: 327 LRGENIVSLTI 359
LRGE IVSL++
Sbjct: 70 LRGEFIVSLSV 80
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 55.2 bits (127), Expect = 3e-06
Identities = 26/78 (33%), Positives = 48/78 (61%)
Frame = +3
Query: 126 KNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXK 305
K++ + +++N ++V R F+G F AFDK+M +IL R + +K ++ ++E +
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTR-EEKEIE 62
Query: 306 RTLGFVLLRGENIVSLTI 359
R+LG +LLRG+ I T+
Sbjct: 63 RSLGMMLLRGDCIQGYTV 80
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 55.2 bits (127), Expect = 3e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M + + L + +N V+V++ R F+G AFD H ++L C +R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGEL- 59
Query: 294 REXKRTLGFVLLRGENIVSLTI 359
+E KR +G ++LRGE ++ + I
Sbjct: 60 QEAKRNIGLMILRGETVLHIDI 81
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 54.0 bits (124), Expect = 8e-06
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 150 LNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSK--------NSKTADREXK 305
+N +R+ L R G AFDKHM L+L FR++K K N+ + E K
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEEK 190
Query: 306 RTLGFVLLRGENIVSLTI 359
RTLG ++RG ++VS ++
Sbjct: 191 RTLGLTIVRGTHVVSCSV 208
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 51.2 bits (117), Expect = 5e-05
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Frame = +3
Query: 150 LNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSK----TADRE---XKR 308
+N +++I +RT++GT +FDKHM L+L R K S+ T + E KR
Sbjct: 5 INFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVELVYDKR 64
Query: 309 TLGFVLLRGENIVSLTI 359
LG ++LRG+ +VS TI
Sbjct: 65 NLGLIILRGDQVVSFTI 81
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 50.8 bits (116), Expect = 7e-05
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+G+ + L ++N +R++L R G +D+HM ++LG R+ ++K K A
Sbjct: 1 MGRESMLH-NINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEAGIS 58
Query: 300 XKRTLGFVLLRGENIVSLTI 359
+R+LG VLLRG +++S+ +
Sbjct: 59 PQRSLGLVLLRGVHVISVNV 78
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 48.8 bits (111), Expect = 3e-04
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKS-----KN 278
+P+ K + ++ +++ +R FIG+ AFDKH+ L+L R K K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMKK 63
Query: 279 SKTADRE-----XKRTLGFVLLRGENIVSLTI 359
S +D + KR+LG ++LRGE IVSL+I
Sbjct: 64 SAGSDGKHDPTFDKRSLGLIILRGEQIVSLSI 95
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 48.8 bits (111), Expect = 3e-04
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Frame = +3
Query: 111 QMPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTA 290
++ + ++ L ++ +RV+ Q R +IG AFDKHM L+L C R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 291 DRE------------XKRTLGFVLLRGENIVSLTI 359
R+ KR LG +LRGE I+S +
Sbjct: 63 PRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVV 97
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 46.4 bits (105), Expect = 0.002
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ LN +RV + RT IG+F DK +ILG C F + S D+E R LG
Sbjct: 4 LESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLG---VDKEDPRILG 60
Query: 318 FVLLRGENIVSLTI 359
++ G +I S+ +
Sbjct: 61 LAMVPGRHIQSIEV 74
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 44.8 bits (101), Expect = 0.005
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Frame = +3
Query: 126 KNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRK--------IKSKNS 281
K L ++ +RV R +IG AFD +M L++G C R +KS +
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
Query: 282 KTAD-REXKRTLGFVLLRGENIVSLTI 359
+++ + +RT G ++LRGE+++S ++
Sbjct: 69 LSSNVQVERRTFGLIILRGEHVLSTSV 95
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 44.4 bits (100), Expect = 0.006
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 126 KNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSK 284
K + +N +R+ L SR +G AFD HM L+L +RK+KS+ +K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 41.5 bits (93), Expect = 0.043
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L LN V + L+ R F G K+FD HM L+L + D E R LG
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA----------EELEDGEVTRRLG 67
Query: 318 FVLLRGENIVSLT 356
VL+RG+NIV ++
Sbjct: 68 TVLIRGDNIVYIS 80
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 39.5 bits (88), Expect = 0.17
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADR----EXK 305
LQ+ + V V L+ R+ G K FDK M +++ + +S N+ +++ E +
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQE 70
Query: 306 RTLGFVLLRGENIVSLTI 359
+G L+RG+N++++ +
Sbjct: 71 TQVGDALIRGDNVITIAV 88
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 38.7 bits (86), Expect = 0.31
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ LN +R+ + R +G F D+ +ILG C + + T E R LG
Sbjct: 39 LRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTI--EEPRMLG 96
Query: 318 FVLLRGENIVSLTI 359
V++ G++I S+ I
Sbjct: 97 LVMVPGKHIQSVAI 110
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 37.5 bits (83), Expect = 0.70
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ LN +R+ + R IG F D+ +ILG C F + D RTLG
Sbjct: 36 LRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF--------LSEDHTEARTLG 87
Query: 318 FVLLRGENIVSL 353
V++ G +IV++
Sbjct: 88 LVMIPGRHIVTI 99
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 37.5 bits (83), Expect = 0.70
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V +I R FIGT K FD+ + +I+ C + T + LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDEC------HERVFSTTSGIEQIVLG 57
Query: 318 FVLLRGENI 344
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 37.1 bits (82), Expect = 0.93
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+Q + V VI R F+G K FD+ L+L C ++ ++ + E LG
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNC--LERVYHPDAPVEELE----LG 58
Query: 318 FVLLRGENIV 347
LLRG+NIV
Sbjct: 59 IYLLRGDNIV 68
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 37.1 bits (82), Expect = 0.93
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXC 248
L+ ++ +RV+ Q R ++GT AFD HM L+L C
Sbjct: 11 LKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADC 47
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 36.3 bits (80), Expect = 1.6
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
+P + L ++ V VIL+ R IG F+++D+ +L C K + AD
Sbjct: 5 IPFTTSGSLVDLVDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYKLEY---AD 61
Query: 294 REXKRTLGFVLLRGENIVSL 353
++ +G +L+RGEN+V+L
Sbjct: 62 KD----IGVLLVRGENVVAL 77
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 35.9 bits (79), Expect = 2.2
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ +L+ V + L+ +RT +GT +AFD H ++L I N++ E +R
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDA--VETIYQLNNEELS-ESERRCE 64
Query: 318 FVLLRGENIVSLT 356
V +RG+ + ++
Sbjct: 65 MVFIRGDTVTLIS 77
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 35.5 bits (78), Expect = 2.8
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 108 DQMPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKT 287
DQ + ++ + V+L+ R G + FD++ LIL C R S+ +K
Sbjct: 36 DQYNFTTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKY 94
Query: 288 ADREXKRTLGFVLLRGENIVSL 353
A+ + G ++RGEN+V L
Sbjct: 95 AEEDR----GIFMIRGENVVML 112
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 34.7 bits (76), Expect = 5.0
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V +I R F+GT K FD+ + +IL ++ S N+ + LG
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILD--ESHERVYSMNAGI----EQVVLG 124
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 125 LHIIRGDNV 133
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 34.7 bits (76), Expect = 5.0
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
++ +L + VI SR F G K FD+ +ILG C + +I ++ + K +LG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNC--YERIYKESLE------KISLG 57
Query: 318 FVLLRGENI 344
++RG+ +
Sbjct: 58 LYIIRGDTV 66
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 34.7 bits (76), Expect = 5.0
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 168 VILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFVLLRGENIV 347
+ L+++R G KA D+H +IL +K + A +R + + LRG+N++
Sbjct: 39 IALRSNRKLYGYIKAVDRHWNMILEHVIEITPTPAKPGQPAAAPIQRRINRLFLRGDNVI 98
Query: 348 SL 353
+
Sbjct: 99 CI 100
>UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;
Eurotiomycetidae|Rep: Contig An01c0290, complete genome
- Aspergillus niger
Length = 527
Score = 34.3 bits (75), Expect = 6.6
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 663 FLEDPVLAHHDPCQEELPSFLEE-GHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQD 487
FLE DP + L SFL E G W + E+ K+ DFLV +MA+ +W+D
Sbjct: 109 FLEQLRHRTADPVAKFLRSFLHEFGKRQWMV---HEQVKIISDFLVFITNKMAQCEVWRD 165
Query: 486 LEDPE 472
+ D E
Sbjct: 166 VSDSE 170
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 34.3 bits (75), Expect = 6.6
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 174 LQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFVLLRGENIVSL 353
L+ ++T GT K FD HM L L +N++ E +G VLLRG+NI+++
Sbjct: 24 LRNNKTVQGTLKDFDIHMNLTL-----------ENAEDVSEEKPNPIGKVLLRGDNILAI 72
Query: 354 TI 359
++
Sbjct: 73 SL 74
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 34.3 bits (75), Expect = 6.6
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L + +N V + L+ ++T G FD+HM L+L S A+ E K LG
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLL---------DSSEEIPAEGEAK-GLG 59
Query: 318 FVLLRGENIVSLT 356
+++RG+N+V ++
Sbjct: 60 SIVVRGDNVVMIS 72
>UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 992
Score = 33.9 bits (74), Expect = 8.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 534 LVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEHFQARP*LPVRE 397
++P V++ A LLLWQ+ PE LRPG + E+ + L R+
Sbjct: 662 VMPQVLKAAGLLLWQEGRSPEALRPGTYVPLNAENLRVHTELQQRD 707
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 33.9 bits (74), Expect = 8.7
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L ++++ +RV Q R G K FD + L+L + + K E R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,734,245
Number of Sequences: 1657284
Number of extensions: 10803329
Number of successful extensions: 49953
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 30360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47727
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 124720521772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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