Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P20.2
         (1235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    60   6e-10
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    31   0.33 
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    31   0.33 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   1.8  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    28   3.1  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   9.4  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +3

Query: 150 LNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKN-SKTADREXKRTLGFVL 326
           LN  + V  +  RTF+G   AFD  M L+L  C  +R IK +N    +  E KR LG V+
Sbjct: 10  LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69

Query: 327 LRGENIVSLTI 359
           LRGE IVSL++
Sbjct: 70  LRGEFIVSLSV 80


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 25/69 (36%), Positives = 32/69 (46%)
 Frame = +3

Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
           L   +   V+VI    R  +G+ K FD    LIL     F +I S +    D E    LG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILS--DSFERIISMDQ---DME-TIPLG 56

Query: 318 FVLLRGENI 344
             LLRGEN+
Sbjct: 57  VYLLRGENV 65


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
           LQQH    + +  Q      G  + FD+ M ++L       ++ +KN+K       R LG
Sbjct: 20  LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAV---QVDAKNNK-------RELG 69

Query: 318 FVLLRGENI 344
            +LL+G+NI
Sbjct: 70  RILLKGDNI 78


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -3

Query: 708 INHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDF-L 532
           I+ ++   T T++V  +   + A+ + C + L  ++E      GL+A E+ + V+  F L
Sbjct: 86  ISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIA-EQSEHVEKAFNL 144

Query: 531 VPCVVEMARLLLWQDLEDPEVL 466
           +  V+ +A      D++ PE+L
Sbjct: 145 LRQVLSVALKAQKPDMDSPELL 166


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 150 LNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXK---RTLGF 320
           L+  V V L+  R   G   A+D+H+ ++LG       I        D+  K   +    
Sbjct: 18  LDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEM 77

Query: 321 VLLRGENIV 347
           + +RG++++
Sbjct: 78  LFVRGDSVI 86


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 597 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 430
           +GH SW   + F+  +  D ++ +  V    +LLLW D     + RP   +Y  + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,502
Number of Sequences: 5004
Number of extensions: 44966
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)