Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P20.2
(1235 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 113 1e-24
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 113 1e-24
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 113 1e-24
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 113 1e-24
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 113 1e-24
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 113 1e-24
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 113 1e-24
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 113 1e-24
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 113 1e-24
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 111 4e-24
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 110 1e-23
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 110 1e-23
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 110 1e-23
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 110 1e-23
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 110 1e-23
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 110 1e-23
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 110 1e-23
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 110 1e-23
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 110 1e-23
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 110 1e-23
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 109 2e-23
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 109 2e-23
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 106 1e-22
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 106 1e-22
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 91 6e-18
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 70 2e-11
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 70 2e-11
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 34 1.2
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 34 1.2
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 34 1.2
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 1.6
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 32 3.7
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 32 3.7
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 32 3.7
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 32 3.7
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 32 3.7
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 113 bits (272), Expect = 1e-24
Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 111 bits (268), Expect = 4e-24
Identities = 65/152 (42%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 110 bits (264), Expect = 1e-23
Identities = 64/152 (42%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 109 bits (263), Expect = 2e-23
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI 359
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 109 bits (263), Expect = 2e-23
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +3
Query: 114 MPLGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTAD 293
M +GK++ + QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REXKRTLGFVLLRGENIVSLTI 359
RE KR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 106 bits (255), Expect = 1e-22
Identities = 63/142 (44%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Frame = +3
Query: 144 QHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFV 323
QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+RE KR LG V
Sbjct: 4 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 63
Query: 324 LLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 491
LLRGEN+VS+T+
Sbjct: 64 LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 123
Query: 492 XRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 124 VRGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 106 bits (255), Expect = 1e-22
Identities = 63/142 (44%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Frame = +3
Query: 144 QHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFV 323
QH++ +R ILQ R FIGTFKAFDKHM LIL C FRKIK KNSK A+RE KR LG V
Sbjct: 4 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 63
Query: 324 LLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 491
LLRGEN+VS+T+
Sbjct: 64 LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 123
Query: 492 XRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 124 VRGVGGPSQQVMTPQGRGTVAA 145
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 91.5 bits (217), Expect = 6e-18
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = +3
Query: 186 RTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLGFVLLRGENIVSLTI-- 359
R FIGTFKAFDKHM LIL C FRKIK KN+K +RE KR LG VLLRGEN+VS+T+
Sbjct: 3 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 62
Query: 360 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAP 533
RGVGGPSQQ M P
Sbjct: 63 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 122
Query: 534 GNRGQLSA 557
RG ++A
Sbjct: 123 QGRGTVAA 130
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 70.1 bits (164), Expect = 2e-11
Identities = 34/66 (51%), Positives = 43/66 (65%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GK++ + H + +R ILQ R FIGTFKAFDKHM +I C FRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 300 XKRTLG 317
KR G
Sbjct: 103 EKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 70.1 bits (164), Expect = 2e-11
Identities = 34/66 (51%), Positives = 43/66 (65%)
Frame = +3
Query: 120 LGKNNXLQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADRE 299
+GK++ + H + +R ILQ R FIGTFKAFDKHM +I C FRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 300 XKRTLG 317
KR G
Sbjct: 103 EKRVSG 108
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 33.9 bits (74), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L ++++ +RV Q R G K FD + L+L + + K E R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 33.9 bits (74), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L ++++ +RV Q R G K FD + L+L + + K E R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 33.9 bits (74), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L ++++ +RV Q R G K FD + L+L + + K E R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 533 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 637
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V VI R +GT K FD+ + LIL + + ++ + LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILD------ESHERVFSSSQGVEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V VI R +GT K FD+ + LIL + + ++ + LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILD------ESHERVFSSSQGVEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V VI R +GT K FD+ + LIL + + ++ + LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILD------ESHERVFSSSQGVEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V VI R +GT K FD+ + LIL + + ++ + LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILD------ESHERVFSSSQGVEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 138 LQQHLNXXVRVILQASRTFIGTFKAFDKHMXLILGXCXXFRKIKSKNSKTADREXKRTLG 317
L+ ++N V VI R +GT K FD+ + LIL + + ++ + LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILD------ESHERVFSSSQGVEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,286,815
Number of Sequences: 237096
Number of extensions: 1780728
Number of successful extensions: 8801
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 4547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8588
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17559747370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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