Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P19.2
         (1241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...   104   2e-23
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    89   1e-18
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   9.4  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score =  104 bits (250), Expect = 2e-23
 Identities = 72/226 (31%), Positives = 107/226 (47%), Gaps = 1/226 (0%)
 Frame = +2

Query: 239 LHAXAXASLPPNVRRRIRALXTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 418
           L +   + LP  V+RRI  L  LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 419 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 598
            G  EP ++E         ++ E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 599 YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEY 778
               +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +FTN +LTK Y
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTY 227

Query: 779 LMKCKPDEESPLEFEGPEIYS-CKGCEINWNAGKNVTVKTIKKKQK 913
                 +E  P       +Y   +G +++W    ++TV+T+ KKQ+
Sbjct: 228 YYM---EESGP---SNVFLYDHAEGDKVDWKENADLTVRTVTKKQR 267


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 3/227 (1%)
 Frame = +2

Query: 260 SLPPNVRRRIRALXTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPN 439
           SL P V+ RI AL  LQK+   I+ +F  ++                 RA I+ G  EP 
Sbjct: 86  SLAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPV 145

Query: 440 DDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNV 619
           DDE       D EEE      QN                    P+ KGIP+FW     NV
Sbjct: 146 DDEL------DHEEE----IFQNNL------------------PDPKGIPEFWLTCLHNV 177

Query: 620 SMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKP 796
            ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+YFTN +LTK Y  K   
Sbjct: 178 FLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYK--- 234

Query: 797 DEESPLEFEGPEIYS-CKGCEINW-NAGKNVTVKTIKKKQKPSPVGQ 931
           D+ SP    G  +Y   +G +INW    KN+TV+   KKQ+     Q
Sbjct: 235 DDLSP---SGEFLYDHAEGDKINWIKPEKNLTVRVETKKQRNRKTNQ 278


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 503 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 589
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,976
Number of Sequences: 5004
Number of extensions: 64648
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)