Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P19.2
(1241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 110 3e-24
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 104 1e-22
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 83 4e-16
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 80 3e-15
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 60 5e-09
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 51 2e-06
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 110 bits (264), Expect = 3e-24
Identities = 81/224 (36%), Positives = 107/224 (47%)
Frame = +2
Query: 242 HAXAXASLPPNVRRRIRALXTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 421
H +L PNVR+R+ L +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 422 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 601
G E D +E A +NAA EG+ D + KG+PDFW
Sbjct: 107 GVVEV----------DGGNDEP---ASENAA--EGK------------DADAKGVPDFWL 139
Query: 602 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 781
+ +LSE +QE DEP LK L+DIK +DP F L+F+F N +F N+VLTK Y
Sbjct: 140 TAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYH 199
Query: 782 MKCKPDEESPLEFEGPEIYSCKGCEINWNAGKNVTVKTIKKKQK 913
M DE+ P+ + G EI W GKN+T K +KKK K
Sbjct: 200 M---VDEDEPI------LEKAIGTEIEWYPGKNLTQKILKKKPK 234
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 104 bits (250), Expect = 1e-22
Identities = 79/224 (35%), Positives = 103/224 (45%)
Frame = +2
Query: 242 HAXAXASLPPNVRRRIRALXTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 421
H SL P VR+R+ L +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 422 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 601
G E D +E A T E+K++ KG+P+FW
Sbjct: 106 GVVEV----------DGVTKEA-------ADETPAEQKEE------------KGVPEFWL 136
Query: 602 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 781
N +N +LSE +QE DE LK L+DIK +P F LEFYF N +F N+VLTK Y
Sbjct: 137 NAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKNSVLTKTYH 196
Query: 782 MKCKPDEESPLEFEGPEIYSCKGCEINWNAGKNVTVKTIKKKQK 913
M DE+ P+ + G EI W GK +T K +KKK K
Sbjct: 197 M---IDEDEPI------LEKAIGTEIEWFPGKCLTQKVLKKKPK 231
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 83.0 bits (196), Expect = 4e-16
Identities = 46/120 (38%), Positives = 63/120 (52%)
Frame = +2
Query: 560 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAP 739
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F EF+F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261
Query: 740 NEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKNVTVKTIKKKQKPS 919
N +F N VLTK Y M + DE P + G EI W+ G +T + + K+ S
Sbjct: 262 NPFFKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPGYCLTQEVLTKESSES 313
Score = 33.1 bits (72), Expect = 0.47
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 242 HAXAXASLPPNVRRRIRALXTLQKEFVDIEAKFYSE 349
H SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 80.2 bits (189), Expect = 3e-15
Identities = 44/114 (38%), Positives = 60/114 (52%)
Frame = +2
Query: 578 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 757
KG+PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 758 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKNVTVKTIKKKQKPS 919
VLTK Y M + DE P + G EI W+ G +T + + K+ S
Sbjct: 163 QVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPGNCLTQEVLTKESSES 208
Score = 39.9 bits (89), Expect = 0.004
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 12/197 (6%)
Frame = +2
Query: 242 HAXAXASLPPNVRRRIRALXTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 421
H SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 422 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD------PNVKG 583
G E + E + L N + E + D++A++ D + KG
Sbjct: 89 GVLEV-EGETEEREEKGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKG 147
Query: 584 IP-DFWYN---IFRN--VSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 745
+F+++ F+N ++ M+ E DEPIL+ +++ H P
Sbjct: 148 FKFEFFFDTNPFFKNQVLTKTYHMIDEDDEPILEKAIGTEIEWH-------------PGN 194
Query: 746 YFTNTVLTKEYLMKCKP 796
T VLTKE KP
Sbjct: 195 CLTQEVLTKESSESTKP 211
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 59.7 bits (138), Expect = 5e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 575 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 751
+K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 752 TNTVLTKEY 778
+T LTK Y
Sbjct: 132 EDTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.8 bits (116), Expect = 2e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 575 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 751
++ IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
Query: 752 TNTVLTKEY 778
+ LTK Y
Sbjct: 137 EDKELTKTY 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,570,737
Number of Sequences: 37544
Number of extensions: 412922
Number of successful extensions: 1082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -