Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P18.2
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    49   2e-06
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   4.1  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    27   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.5  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +2

Query: 161 LGRQMLCYNSRIPIHXLDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIR 340
           +GRQ+L    R+    +D RI  +T ++V  V  + ++D+  AV+AVG  EGL DY RIR
Sbjct: 390 IGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIR 449

Query: 341 GGM 349
             +
Sbjct: 450 SSI 452


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/60 (23%), Positives = 22/60 (36%)
 Frame = +2

Query: 44  RRSNSVHLVTXTLQXRVLSTSSIPXXXXXXXXXXPVCAALGRQMLCYNSRIPIHXLDARI 223
           R    VH +   L  +VL    +P          P C  + +    +NS  P    D+R+
Sbjct: 94  RTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRV 153


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 230 QIQYEHQVHGWGCGCCSRAFDDQELHRQ-EWXXQVAKAMLGLRK 102
           Q+Q +    GWG G   R  DD++LH+  ++   +  A    RK
Sbjct: 70  QVQTQSSYIGWGTGSLKR--DDEDLHKAVDYFLHIGGADFSTRK 111


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 812 PKXXXPFPPXXXVFLXXXXPPXPPPXXXXKKK 717
           P    P PP    F     PP PPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,617
Number of Sequences: 5004
Number of extensions: 23155
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)