Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P18.2
         (1261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583...    66   4e-11
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395...    46   6e-05

>03_02_0138 +
           5837813-5838490,5839000-5839164,5839289-5839426,
           5839496-5839647,5839754-5839862,5840551-5840649,
           5840739-5840804,5840891-5840998,5841820-5841906
          Length = 533

 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = +2

Query: 161 LGRQMLCYNSRIPIHXLDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIR 340
           +GRQ+L Y  RIPI  L ARI++V    V+ V  +++FD+  A+AA+GP +GLPDY   R
Sbjct: 466 IGRQLLIYGRRIPIPELFARIDAVDASTVKRVANRFIFDQDIAIAAMGPIQGLPDYNWFR 525

Query: 341 GGMYWVR 361
              Y +R
Sbjct: 526 RRTYMLR 532


>01_06_0459 +
           29538025-29538579,29539190-29539354,29539448-29539585,
           29539685-29539836,29539949-29540057,29540281-29540379,
           29541051-29541116,29541208-29541315,29541428-29541553
          Length = 505

 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = +2

Query: 164 GRQMLCYNSRIPIHXLDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRG 343
           GRQML Y   +P   L ARI++V    V +    ++ D+  A+AAVGP   LP+ +  R 
Sbjct: 426 GRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSWFRS 485

Query: 344 GMY 352
             Y
Sbjct: 486 HTY 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,120
Number of Sequences: 37544
Number of extensions: 208064
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)