Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P18.2
         (1261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical pr...    67   3e-11
U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical pr...    44   2e-04
AL161712-9|CAC70134.1|  343|Caenorhabditis elegans Hypothetical ...    30   4.0  

>Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical
           protein ZC410.2 protein.
          Length = 458

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 32/66 (48%), Positives = 40/66 (60%)
 Frame = +2

Query: 146 PVCAALGRQMLCYNSRIPIHXLDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPD 325
           PVC  +GRQ+LCY  RIP   L ARIES+TVQ +RDVC +   +   + A VG T+  P 
Sbjct: 387 PVCEDIGRQLLCYGRRIPTPELHARIESITVQQLRDVCRRVFLEGQVSAAVVGKTQYWPV 446

Query: 326 YTRIRG 343
              I G
Sbjct: 447 NEEIHG 452


>U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical
           protein F56D2.1 protein.
          Length = 471

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 155 AALGRQMLCYNSRI-PIHXLDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYT 331
           A    + L Y   +  +  L+A+I+ V    VR+   ++++DR  A   VG TE  P+Y 
Sbjct: 401 AGFNAKELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNYA 460

Query: 332 RIRGGMYWVR 361
             R GM W R
Sbjct: 461 LTRAGMSWWR 470


>AL161712-9|CAC70134.1|  343|Caenorhabditis elegans Hypothetical
           protein Y66D12A.12 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 284 DNGQISICSKH--HVHSVQ*QIQYEHQVHG-WGCGCCSRAF-DDQELH 153
           D+ Q  +C     H  +++  +Q EH +   + CGCC+  F D +ELH
Sbjct: 43  DDQQCLVCDTKIPHNDTIRRHMQKEHNIQRVFTCGCCNWTFPDKKELH 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,949,346
Number of Sequences: 27780
Number of extensions: 158000
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)