Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P16.2
         (1234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   7.1  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   9.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   9.3  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 512 DRSFTLVNWQRTQWKKYICVLR 577
           DR+  LV  Q++  K+Y+CVLR
Sbjct: 112 DRATRLVKSQQSAGKEYVCVLR 133


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -3

Query: 293 THRPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQT 114
           T  P+ SG  T  R     ++ GA+ +G   S    +L        Q     T T  ++T
Sbjct: 148 TPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVSNATATTQLET 207

Query: 113 K 111
           K
Sbjct: 208 K 208


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 234 LTRGSHIRCADFFDAPQSRWNE----R*TGAVGFYPYSH*NYTNKNLSA*HFQLSRKYRH 67
           L R S I CA +F   +SR+NE    R T  V FY  +    T++N    H+       H
Sbjct: 3   LGRSSWICCAKYFVNTKSRFNEILPPRFTLIVSFYSMN----TSENDPDGHYDFPEMTEH 58

Query: 66  H 64
           H
Sbjct: 59  H 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,051,779
Number of Sequences: 5004
Number of extensions: 84021
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)