Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P16.2
         (1234 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center...    33   0.42 
U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center...    33   0.42 
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    33   0.42 
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    33   0.42 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   1.3  
AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical ...    31   2.2  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   5.1  

>U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform d protein.
          Length = 638

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 371 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 201
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 441

Query: 200 SLTL 189
           S  L
Sbjct: 442 SWEL 445


>U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform b protein.
          Length = 651

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 371 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 201
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 454

Query: 200 SLTL 189
           S  L
Sbjct: 455 SWEL 458


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 371 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 201
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 453

Query: 200 SLTL 189
           S  L
Sbjct: 454 SWEL 457


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 371 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 201
           S  +  ++  A  +  ++HT  +GGAT     S  G+P+ +LART    SP    SG+  
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 456

Query: 200 SLTL 189
           S  L
Sbjct: 457 SWEL 460


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 265 PPPLCAGRCVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGVC 426
           P  +C   C     G V      G+   T++ LCEL+  +C+        S+G+C
Sbjct: 798 PDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852


>AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical
           protein C18E3.2 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 SAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPV 315
           SAP MR PG         G PP +   R VAPPA P+
Sbjct: 21  SAPQMRRPGGFA------GQPPQMHGPRMVAPPAAPL 51


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 377 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 198
           +ASS +   +      AS   T  +G +T  P+   G + S     T +  + ISG+  S
Sbjct: 597 SASSIYSTLSGSTGSTASPGTTESSGSSTSGPSTISGSSASTVTGSTVTEASTISGSTES 656

Query: 197 LTLP 186
            T+P
Sbjct: 657 STIP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,675,301
Number of Sequences: 27780
Number of extensions: 494237
Number of successful extensions: 1510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)