Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P12.2
         (1229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.7  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   4.0  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   7.0  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +3

Query: 642  CNAVIMNSTLASSVAPYSDVEPAEQVT---EDTQ---LLPNKEKI 758
            CN++++NSTL+S + P  D   + +V    ED     L PNK K+
Sbjct: 1089 CNSIVINSTLSSIIVPCYDRPISSRVNSIIEDIARIGLAPNKVKL 1133


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +3

Query: 606 LPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVEAIVVKE 785
           + +  E     D   V+M     ++   YS  EP EQ     Q   NK+ + V+ + +  
Sbjct: 39  IKKAHELSVLCDAKVVVMIFDSKNACHVYSSEEPEEQRDALLQKFLNKDFVTVDPLRIAS 98

Query: 786 LTSHGA 803
           +T++ A
Sbjct: 99  VTTYSA 104


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 537 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDY 632
           K+  K + + + S  IP+LH+ S+   E +D+
Sbjct: 155 KKLKKDVDERVVSKDIPKLHRDSVESPESQDW 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,645
Number of Sequences: 5004
Number of extensions: 54235
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)