Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P12.2
         (1229 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    27   1.1  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    25   6.0  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
 Frame = +3

Query: 411 INQIHKDNEIFARRTIKVPVTP-YSVLTELIXXXXXXXXXXXXKQTPKSIQQLLQSNGIP 587
           I ++  +  I  +R +  P  P  S L                KQ    + Q L  +   
Sbjct: 301 IEELENECRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDRMLQALHDDETG 360

Query: 588 QLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVE 767
           Q  +  L + +    A D + V++ S +++    +SD  PAE  TED   + N  ++P+ 
Sbjct: 361 QCIRKVLYRLQPSRTAQDRDPVVLKSVVSTM---FSDHSPAEWPTEDKHEIGN--RVPLR 415

Query: 768 AIVVKEL 788
            +   EL
Sbjct: 416 EVTDLEL 422


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +2

Query: 392 HCRIEKNQPNPQRQRDFCKENN*SPGYTLLCLNRVNTIRATRADTLNLETNAKIDTATLT 571
           H R    +P   R+R    E++ SPG   +  +R NT+ A  A + N  TN  I      
Sbjct: 124 HNRNSDPRPATGRKRRRIIEDSASPGVNKIVNSRGNTLCA--ASSPNAYTNTTIAVQPAP 181

Query: 572 KQWHTAV 592
            Q H  V
Sbjct: 182 TQPHELV 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,237
Number of Sequences: 2352
Number of extensions: 15107
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 140200221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)