Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P12.2
         (1229 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein pr...    63   2e-09
BC084545-1|AAH84545.1|  296|Homo sapiens LYSMD4 protein protein.       44   9e-04
BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative peptidog...    43   0.003
AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan ...    43   0.003
BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative peptidog...    42   0.006
AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative peptidog...    42   0.006

>BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein
           protein.
          Length = 345

 Score = 63.3 bits (147), Expect = 2e-09
 Identities = 26/53 (49%), Positives = 40/53 (75%)
 Frame = +3

Query: 342 VQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTELI 500
           +QEG TL AIAL++ C++A++KR+N +  D + FA R+IK+PV  +S LTE +
Sbjct: 108 IQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETL 160


>BC084545-1|AAH84545.1|  296|Homo sapiens LYSMD4 protein protein.
          Length = 296

 Score = 44.4 bits (100), Expect = 9e-04
 Identities = 13/55 (23%), Positives = 38/55 (69%)
 Frame = +3

Query: 330 IEAQVQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 494
           ++ ++ +  +L  +AL++ C +A++K++N   ++ +++A +++K+PV  + +L E
Sbjct: 74  LQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKIPVRNHGILME 128


>BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 2 protein.
          Length = 215

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 17/47 (36%), Positives = 34/47 (72%)
 Frame = +3

Query: 330 IEAQVQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 470
           +E +V+ G TLQ IAL++  ++ ++KR N++  ++ IF ++T+ +PV
Sbjct: 71  VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117


>AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan
           binding domain protein-like protein protein.
          Length = 215

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 17/47 (36%), Positives = 34/47 (72%)
 Frame = +3

Query: 330 IEAQVQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 470
           +E +V+ G TLQ IAL++  ++ ++KR N++  ++ IF ++T+ +PV
Sbjct: 71  VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117


>BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 41.5 bits (93), Expect = 0.006
 Identities = 14/47 (29%), Positives = 34/47 (72%)
 Frame = +3

Query: 330 IEAQVQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 470
           +E Q++ G TL  +AL++  ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 40  LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86


>AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 41.5 bits (93), Expect = 0.006
 Identities = 14/47 (29%), Positives = 34/47 (72%)
 Frame = +3

Query: 330 IEAQVQEGXTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 470
           +E Q++ G TL  +AL++  ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 40  LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,283,003
Number of Sequences: 237096
Number of extensions: 1865645
Number of successful extensions: 3816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3816
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17449654910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)