Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P11.2
         (1312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   236   2e-62
AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical ...    31   1.8  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   9.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  236 bits (578), Expect = 2e-62
 Identities = 109/188 (57%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
 Frame = +2

Query: 68  VRRSLKAXGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 247
           + + LK+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP
Sbjct: 5   IGKLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVP 64

Query: 248 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTS 424
           +P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+
Sbjct: 65  VPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTA 124

Query: 425 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 604
           V+DA L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++
Sbjct: 125 VHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKD 184

Query: 605 VTFEFPEP 628
           VTFEFP+P
Sbjct: 185 VTFEFPDP 192


>AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical
           protein Y47D3B.9 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = +2

Query: 2   SVLDXVGNSLRFAPAPPKLSR*VRRSLKAXGAEADSFETSISQALVELETNS------DL 163
           ++L+  GNS   APAPPK S   +RS     A  D+   S+S + V+ + +S        
Sbjct: 563 AMLNAAGNSTSSAPAPPKSSTSQQRSSSPPSAH-DTSNGSMSPSKVDKDPSSFSLSEGHC 621

Query: 164 KAQLRELYITKAKEIELHNKKSII 235
            AQL  + +     +  H ++S I
Sbjct: 622 AAQLMSMALDLEMTMSYHKRRSEI 645


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 138 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 248
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,051
Number of Sequences: 27780
Number of extensions: 334242
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)