Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P10.2
         (1257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   173   4e-44
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   171   1e-43

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  173 bits (421), Expect = 4e-44
 Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
 Frame = +2

Query: 272 PQSRLLVRXSNXDVTCQVASSRLXGAHIVCAAXSHXLPRYGVXVGXXXXXXXXXXXXXXX 451
           P+ RL+VR SN  VTCQ+ SSR+ G +++  A S  LPRYG+  G               
Sbjct: 47  PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVA 106

Query: 452 XXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGA 631
                                     E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 107 RRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166

Query: 632 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 811
            DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  
Sbjct: 167 SDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGL 226

Query: 812 IKLGVTADAIEAIYKKAHEAIRADPS--HXXXXXXXXXXXXXRWNKRKLTLAERK 970
           I  G+ +D +E IY +A+  IR DPS                ++ +RKLT  ERK
Sbjct: 227 IADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK 281


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  171 bits (417), Expect = 1e-43
 Identities = 94/235 (40%), Positives = 128/235 (54%), Gaps = 2/235 (0%)
 Frame = +2

Query: 272 PQSRLLVRXSNXDVTCQVASSRLXGAHIVCAAXSHXLPRYGVXVGXXXXXXXXXXXXXXX 451
           P+ RL+VR SN  VTCQ+ SSR+ G +++  A S  LPRYG+  G               
Sbjct: 47  PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVA 106

Query: 452 XXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGA 631
                                     E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 107 RRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166

Query: 632 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 811
            DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  
Sbjct: 167 SDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGL 226

Query: 812 IKLGVTADAIEAIYKKAHEAIRADPS--HXXXXXXXXXXXXXRWNKRKLTLAERK 970
           I  G+ +D +E IY +A+  IR DPS                +  +RKLT  ERK
Sbjct: 227 IADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,000
Number of Sequences: 5004
Number of extensions: 50365
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)