Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P08.2
         (1219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   128   2e-30
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.99 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   1.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   5.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   9.2  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  128 bits (308), Expect = 2e-30
 Identities = 73/172 (42%), Positives = 101/172 (58%)
 Frame = +2

Query: 119 MXLSQAILTGAALFSDTXKMXLVDXVIYXVXGRLVXXAQGDIQXEGFNPSAEAADEGTDS 298
           M L + +++G  L SD   +  VD ++Y    ++V   QG     G NPSAE A+E  + 
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEE 60

Query: 299 AVEXGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVM 478
             E   ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +
Sbjct: 61  GTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFV 118

Query: 479 KDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 634
           K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 119 KKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 314 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 460
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 675 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 562
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 334 VVQDYVNSALDGRVRALVSRFSRRIKTLXLDIT 236
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 590 VFAYHQSLYIPSWQPC-HHN 534
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,878
Number of Sequences: 5004
Number of extensions: 51241
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)