Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P08.2
         (1219 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...   105   9e-23
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.60 
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   4.2  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   9.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score =  105 bits (251), Expect = 9e-23
 Identities = 68/174 (39%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
 Frame = +2

Query: 119 MXLSQAILTGAALFSDTXKMXLVDX-VIYXVXGRLVXXAQGDIQXEGFNPSAEAA--DEG 289
           M + Q +LTG  L SD+     ++  +++ V G+ V     D+   G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 290 TDSAVEXGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 469
            D      VDIV   RL E   F DKK +  ++K Y+K L AKL+    ++ E FK N+ 
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115

Query: 470 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 631
              K +LG+ K+LQFF GESM  DG +    Y+  DG   P  ++F HGL+E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 562 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 428
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 359  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 532
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 533  D 535
            +
Sbjct: 1195 E 1195


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 332 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 511
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 512 FFTGE 526
             + E
Sbjct: 237 VLSKE 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,989
Number of Sequences: 37544
Number of extensions: 313461
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)