Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P07.2
         (1299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.9  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect(2) = 0.14
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = -3

Query: 523  PPXPPPXXXXXIFXEGKXXXXXXXXXXXXXXAXFXXXYXPPPPPPP 386
            PP PPP                         A     + PPPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952



 Score = 25.4 bits (53), Expect(2) = 0.14
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 406 PPPPPPPL 383
           PPPPPPPL
Sbjct: 947 PPPPPPPL 954


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 406 PPPPPPPLXXXXXTPPL 356
           PPPPPPP       PP+
Sbjct: 311 PPPPPPPSRRNRGKPPI 327


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 412 YXPPPPPPPLXXXXXTPPLR 353
           Y PPPPPPP      +P  R
Sbjct: 368 YSPPPPPPPPELLNHSPKSR 387


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/72 (27%), Positives = 24/72 (33%)
 Frame = -1

Query: 465 PPPXPXPLFPPXPXFXLYXXXXXXXXPSAXXXXPPPCVTPSXXXSXGXPXPPXFPLFPXX 286
           PPP P  +  P P             P+     PPP   P      G P PP  P  P  
Sbjct: 732 PPPPPPAVIVPTPA----PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP--PAV 785

Query: 285 SFFSXXFFXPPP 250
           S     ++ P P
Sbjct: 786 SAGGSRYYAPAP 797


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 412 YXPPPPPPP 386
           Y PPPPPPP
Sbjct: 187 YNPPPPPPP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.149    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,433
Number of Sequences: 5004
Number of extensions: 28078
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)