Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_P03.2
         (1261 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    27   0.30 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   4.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 398 VXLNEVP--STSNTEPISQRYVNLPNICLVVSFNLSTSNFISV 276
           V L++VP  ST N   +S  + +LP + L V+ N+S+  ++++
Sbjct: 455 VSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNL 497


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 380 PSTSNTEPISQRYVNLPNICLVVSFNLSTSNFI 282
           PST+ T   +   +N   +   + FN+STSN++
Sbjct: 8   PSTTTTTTTTSSALNSTPL---IEFNISTSNYL 37


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 380 PSTSNTEPISQRYVNLPNICLVVSFNLSTSNFI 282
           PST+ T   +   +N   +   + FN+STSN++
Sbjct: 8   PSTTTTTTTTSSALNSTPL---IEFNISTSNYL 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,809
Number of Sequences: 336
Number of extensions: 4641
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36993960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)