Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_P03.2
(1261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 88 3e-18
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 30 0.59
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 29 1.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 3.1
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 28 3.1
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 4.1
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 5.5
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 7.2
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.2
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 26 9.5
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 87.8 bits (208), Expect = 3e-18
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
Frame = +1
Query: 223 IQYVPFSSFVHPSFWHTLTEMKLEVDKLKETTKQIFGRF-TY-RCDIGSVFEVDGTSFNX 396
+Q+ F S + +FWH L+ K+E KL + I G+F TY R +I VF ++ N
Sbjct: 7 LQFQSFHSSIDATFWHQLSNYKVEKQKLDASPLTIHGKFNTYSRGNISIVFGEAPSNSNI 66
Query: 397 TPHLEQQYHHVMGTIMNKNTIEDFKSIDKASLLNSIGEMIWSNLRERTWITNPSALLNFF 576
L + GT++N NT ++F + D + IGE++ ++++ P+ LL F
Sbjct: 67 KDCLAE------GTLLNANTPQEFTNADVKKIREEIGEVLLNSIKNGVVSERPNELLRFL 120
Query: 577 ILSFADLKKFHYYYWFAFPA-PSQPTVHMKGRSTKISDYFNNKQLETLSQCYKSLEENQK 753
I S+AD+K + Y+YW FP+ P +K S S + L + + + + Q+
Sbjct: 121 IFSYADIKAYKYHYWCLFPSFKETPHWIVKDLSPAESLIPSGPILSQIREFLSTADYYQR 180
Query: 754 NFFVVIKKNDD 786
FF++IK D
Sbjct: 181 PFFLLIKSTLD 191
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 30.3 bits (65), Expect = 0.59
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 637 PSQPTVHMKGRSTKISDYFNNK-QLETLSQCYKSLEENQKNFFVVIKKNDDLS 792
P PT+H K I D FN + E+L + KS Q ++ KND+ S
Sbjct: 379 PPSPTIHTKAALADILDIFNQPLRSESLEKSSKSPISAQSSYLGTPLKNDENS 431
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 368 NTEPISQRYVNLPNICLVVSFNLSTSNFISVRVCQNDG*T 249
+T P QRY++L +C V++ L +N ++ + G T
Sbjct: 298 STSPKHQRYISLQEVCSVIAQQLQITNLEALNKLSSHGET 337
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -1
Query: 301 CLLLISFQ*GYARMMDERKTKTAHTVLFLFGFVLPTYFQHNKIEFLIYFFTQCSYNVLYR 122
CLLL++F+ + R + + F + F N I L+ +F QCSY+V Y
Sbjct: 135 CLLLLAFKLFFIRNDPTPFNARSANLKNYIAFPI-CLFVINHILILLGYF-QCSYSVFYA 192
Query: 121 FTFFLKL 101
F++ L
Sbjct: 193 SVFYILL 199
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 454 CFCSLLYPSHDDIVA 410
CFC++LY +HD+ +A
Sbjct: 196 CFCTILYIAHDEFIA 210
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 427 VMG-TIMNKNTIEDFKSIDKASLLNSIGEMIWSNLRERTWITNPSAL 564
+MG T +KN +ED KAS +SI M+ + E + + N S+L
Sbjct: 156 IMGVTKSSKNLVEDAHKSKKASTNSSINNMVSTVNSENSNVNNGSSL 202
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 SFNXTPHLEQQYHHVMGTIMNKNTIEDFKSIDKASLLN-SIGEMIWSNLRERTWITNPSA 561
SF +LEQQ+H + + N I D S + SL S E I S +R+ I A
Sbjct: 14 SFRNNENLEQQFHPLREELDNAGPINDRTS--ELSLEGVSKAEAIASTWSKRSIIV---A 68
Query: 562 LLNFFILSFA 591
L ++LSFA
Sbjct: 69 YLGLYLLSFA 78
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 355 IGSVFEVDGTSFNXTPHLEQQYHHVMGTIMNKNTI 459
I S+F + F LE+QYHHV+ ++ N I
Sbjct: 660 ISSIFWIAHHVFANDALLEKQYHHVLYSLANTYVI 694
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 533 SLRLDHIISPIEFSNEALSIDLKSS 459
S+RL+HI + I FS++ S +KSS
Sbjct: 475 SIRLNHIENSISFSSDLFSNPIKSS 499
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 268 ARMMDERKTKTAHTVLFLFGFVLPTYFQHNKIEFLIYFF 152
+R MDE KT H+++ FGF+ KI + +Y +
Sbjct: 205 SRYMDE---KTLHSIMIQFGFICRQKSISKKIAYYLYSY 240
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 773 LITTKKFFWFSSSDL*H 723
++T + FFW S SDL H
Sbjct: 400 IVTNEDFFWISQSDLEH 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,224
Number of Sequences: 5004
Number of extensions: 75393
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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