Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O22.2
         (1276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    81   2e-16
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    32   0.15 

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 7/215 (3%)
 Frame = +2

Query: 167 YDXVXXXXXXVPIXYXLNDLXVMLKIPLISGSALKMEGQXXIYGYRRQDHHQETYIGPCY 346
           YD V          Y ++D  V+L  PL+S SALK+EGQ  IY Y           GPCY
Sbjct: 134 YDVVLDCTDNQYTRYLISDTCVLLGRPLVSASALKLEGQLCIYNYCN---------GPCY 184

Query: 347 RCVFPTPPPPAAVGSCSAHXXXXXXXXXXXXLQALEAIKYV--IGRTERHLLVGRMLLFD 520
           RC+FP P P   V SC+              +QALE +K +  I   ++      MLLF 
Sbjct: 185 RCMFPNPTP--VVASCAKSGILGPVVGTMGTMQALETVKLILHINGIKKDQFDPYMLLFH 242

Query: 521 G-EDATFRAVKLRPRRPACVACGDRGGGRLIDYEQFCNAPAKEKDLDLEVLPXENRVXAN 697
             +   ++ +++RPR+ +C ACG     +++  E F  +  KE     + +P  ++  A 
Sbjct: 243 AFKVPQWKHIRIRPRQQSCKACGP---NKMLSRE-FMESSPKEYTTICDYVPTLSKQLAP 298

Query: 698 ELNV----MMNNEERGGRXLVVDVRNEQEYAMCXI 790
              +    + N  E       +DVR   ++ +C +
Sbjct: 299 IRRISALDLKNLIETSPHITFLDVREPVQFGICRL 333


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 751 HHEXTSSSLL-VIHHYVQFVGXDPIFRRQHLQIQVLLFGRRIAELLIIDQXAPSAVPTRH 575
           HH   S   +    HY  FVG D  F  Q    Q L +G   A +++I   A     T H
Sbjct: 127 HHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFYGFSAACMVLI-STAIMISRTYH 185

Query: 574 ARGSPRTQLY 545
            R  P T ++
Sbjct: 186 YRSLPGTWIF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,694
Number of Sequences: 5004
Number of extensions: 37678
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)