Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_O22.2
(1276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 130 3e-30
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 103 2e-22
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 31 1.5
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200... 30 4.5
10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238 29 5.9
02_04_0055 - 19290975-19292312 29 5.9
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 29 7.8
05_01_0137 + 917533-917814,918080-918352 29 7.8
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 130 bits (313), Expect = 3e-30
Identities = 84/232 (36%), Positives = 111/232 (47%), Gaps = 6/232 (2%)
Frame = +2
Query: 167 YDXVXXXXXXVPIXYXLNDLXVMLKIPLISGSALKMEGQXXIYGYRRQDHHQETYIGPCY 346
YD V +P Y ++D V+L PLISG+AL +EGQ +Y HH + PCY
Sbjct: 157 YDIVVDATDNLPTRYMISDCCVLLNKPLISGAALGLEGQLTVY------HHNGS---PCY 207
Query: 347 RCVFPTPPPPAAVGSCSAHXXXXXXXXXXXXLQALEAIKYVIGRTERHLLVGRMLLFDGE 526
RC+FP PPP AA CS LQALEAIK E L GRMLLFD
Sbjct: 208 RCLFPNPPPVAACQRCSDSGVLGVVPGVIGCLQALEAIKVATDVGEP--LSGRMLLFDAL 265
Query: 527 DATFRAVKLRPRRPACVACGDRGG-----GRLIDYEQFCNAPAKEKDL-DLEVLPXENRV 688
A R VK+R C CG+ + DYE F +P +K L++LP RV
Sbjct: 266 SARIRIVKIRGSSTVCTVCGENSAFTQDDFQKFDYENFTQSPMSDKSAPSLDILPGSARV 325
Query: 689 XANELNVMMNNEERGGRXLVVDVRNEQEYAMCXIQGSVXYPVXNLXRXLEEL 844
E +++N G R L++DVR + + + S+ P+ L L+ L
Sbjct: 326 TCKEYKRLVDN---GERHLLLDVRPAHHFQIASVSQSLNIPLSELEEKLQML 374
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 103 bits (248), Expect = 2e-22
Identities = 73/230 (31%), Positives = 104/230 (45%), Gaps = 7/230 (3%)
Frame = +2
Query: 167 YDXVXXXXXXVPIXYXLNDLXVMLKIPLISGSALKMEGQXXIYGYRRQDHHQETYIGPCY 346
YD V +P Y ++D V++ PLISGSA+ +EGQ +Y HH + PCY
Sbjct: 162 YDIVVDATNNLPSRYMISDCCVLMNKPLISGSAVGLEGQLTVY------HHNGS---PCY 212
Query: 347 RCVFPTPPPPAAVGSCSAHXXXXXXXXXXXXLQALEAIKYVIGRTERHLLVGRMLLFDGE 526
RC++P PP SCS + LQALEAIK + L GRML FD
Sbjct: 213 RCLYPNPPSSPTSQSCSDNGILGILPGVIGCLQALEAIK--VATAVGKPLCGRMLHFDAL 270
Query: 527 DATFRAVKLRPRRPACVACGD-----RGGGRLIDYEQFCNAPAKEKDL--DLEVLPXENR 685
+ R VK+ P C CG+ + DYE F +P + L +LP R
Sbjct: 271 SSHTRIVKISRSSPTCKVCGENPVFTKEDFVNFDYESFTQSPMSKNSTTRSLNLLPENAR 330
Query: 686 VXANELNVMMNNEERGGRXLVVDVRNEQEYAMCXIQGSVXYPVXNLXRXL 835
V + ++++ G L+VDVR + + + S+ P+ L L
Sbjct: 331 VSCRDYKKVLDS---GRPHLLVDVRPSHHFQIASMAHSINVPLSLLEEKL 377
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 637 RRIAELLIIDQXAPSAVP-TRHARGSPRTQLYCPKGRVLSVEQQHAADQQVPL 482
+R E L +D APS +P A G +T CPK +L+ Q H + +VPL
Sbjct: 112 QRRGEHLFLDCSAPSLIPKVIIASGQTKT---CPKCSILAQYQTHILEARVPL 161
>03_01_0260 -
1999462-1999488,1999748-1999930,2000940-2001146,
2001895-2002359
Length = 293
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 637 RRIAELLIIDQXAPSAVPTRHARGSPRTQLYCPKGRVLSVEQQHAAD 497
R + E Q A S+ P A G+P+ KG++L V + AD
Sbjct: 135 RELEEFFAAKQSASSSTPPASAPGAPQDAPKTDKGKILKVSWEGGAD 181
>10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238
Length = 181
Score = 29.5 bits (63), Expect = 5.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 449 LEAIKYVIGRTERHLLVGRMLLFD--GEDATFRAVKLRPRRPACVACGDRGGGRLI 610
+EA++ R+LLV L+ + G A AV+ PR C A D G G L+
Sbjct: 76 MEAVRAAQAENARNLLVRARLICERRGVAAATVAVEGEPREALCRAAEDAGAGLLV 131
>02_04_0055 - 19290975-19292312
Length = 445
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 402 WAEQLPTAAGGGGVGNTQR*QGPMYVSW*WSCLLYP 295
W AA GGVG ++ G + SW W+ L P
Sbjct: 356 WLSAAEGAATAGGVGGARKLGGRSHRSWAWTALASP 391
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 29.1 bits (62), Expect = 7.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 638 PAHCRTAHNRSXGPLRGPHTPRTRVS 561
P+H R++H + P+ GP++ R R S
Sbjct: 674 PSHSRSSHQHNRDPVDGPNSKRQRTS 699
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 341 CYRCVFPTPPPPAAVG 388
C RC P PPPPAA G
Sbjct: 81 CRRCTPPPPPPPAAGG 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,304
Number of Sequences: 37544
Number of extensions: 346809
Number of successful extensions: 1426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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