Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O22.2
         (1276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...   124   2e-28

>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score =  124 bits (298), Expect = 2e-28
 Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 1/214 (0%)
 Frame = +2

Query: 164 DYDXVXXXXXXVPIXYXLNDLXVMLKIPLISGSALKMEGQXXIYGYRRQDHHQETYIGPC 343
           +Y+ V      V   Y +ND+ V+L IPL+SGSAL+ +GQ  +Y Y            PC
Sbjct: 127 NYEIVCDCTDNVATRYLINDVCVLLNIPLVSGSALRWDGQLSVYHYGSD--------CPC 178

Query: 344 YRCVFPTPPPPAAVGSCSAHXXXXXXXXXXXXLQALEAIKYVIGRTERHLLVGRMLLFDG 523
           YRC+FP+PP P +V +C+              +QALE +K  I    R  L G++LLFDG
Sbjct: 179 YRCLFPSPPDPNSVTNCNEGGVLGPIVGVIGSMQALEVMK--IAAKVRTTLAGQLLLFDG 236

Query: 524 EDATFRAVKLRPRRPACVACGDRGG-GRLIDYEQFCNAPAKEKDLDLEVLPXENRVXANE 700
            +   R ++LR R P C  CGD       IDY  FC A A +K  +L++L   +RV   E
Sbjct: 237 REGKSRTIRLRKRDPKCEVCGDNPTITAPIDYVLFCGAGAHDKIENLKLLELSDRVNVTE 296

Query: 701 LNVMMNNEERGGRXLVVDVRNEQEYAMCXIQGSV 802
                 N+ R  + +++D R   E+ +  +  ++
Sbjct: 297 ----YRNKRREQKPVLLDTRPSLEFEIAHLPEAI 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,652
Number of Sequences: 27780
Number of extensions: 240727
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)