Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O21.2
         (1295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   7.5  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   7.5  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +2

Query: 494 FNSIFDGRVV----AKLPFYPISWIQGLSHRNLP 583
           FN IF   +V     +LP+Y   WI    +R LP
Sbjct: 8   FNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLP 41


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 592 LHRLFFHIFVHSVYNEHQTKHTKVA 666
           LHR+ F IFVHS  N     H + A
Sbjct: 79  LHRILFPIFVHSYLNLLSQDHYEAA 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,581
Number of Sequences: 5004
Number of extensions: 45453
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)