Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O19.2
         (1290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    85   2e-17
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    85   2e-17
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   9.8  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +3

Query: 225 WFSVRCAAILRHXYIRSPVGVKPVTKLFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 404
           W+ VR AAI RH Y+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 405 LVEXVQDGGRILTTQGXRALDRI 473
           ++E   +GGR ++ QG R LDRI
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDRI 134


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +3

Query: 225 WFSVRCAAILRHXYIRSPVGVKPVTKLFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 404
           W+ VR AAI RH Y+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 405 LVEXVQDGGRILTTQGXRALDRI 473
           ++E   +GGR ++ QG R LDRI
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDRI 134


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 863 TQTAFSPRXXRFINXEKTXPHLPLNLKHKMNAI 765
           T+  FSP    F+N E++  +L  N  H+   I
Sbjct: 485 TRKVFSPEFGLFVNCEESSNYLWFNYSHRSKEI 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,995
Number of Sequences: 5004
Number of extensions: 43800
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)