Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O19.2
         (1290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    87   3e-17
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    87   3e-17
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    30   4.1  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    30   4.1  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    30   4.1  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +3

Query: 225 WFSVRCAAILRHXYIRSPVGVKPVTKLFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 404
           WF  R A++ RH Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 405 LVEXVQDG-GRILTTQGXRALDRI 473
            VE   DG GRIL+ QG + LDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +3

Query: 225 WFSVRCAAILRHXYIRSPVGVKPVTKLFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 404
           WF  R A++ RH Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 405 LVEXVQDG-GRILTTQGXRALDRI 473
            VE   DG GRIL+ QG + LDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 766 IAFILCFRFRGRCGXVFSXLMNRXXRGEKAVXVLGAL 876
           I FI+C  F G  G +FS LM     G  A+ +LG +
Sbjct: 225 IPFIICMEFMGNSGRIFSGLMTSLFFG-AAMALLGVV 260


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 766 IAFILCFRFRGRCGXVFSXLMNRXXRGEKAVXVLGAL 876
           I FI+C  F G  G +FS LM     G  A+ +LG +
Sbjct: 208 IPFIICMEFMGNSGRIFSGLMTSLFFG-AAMALLGVV 243


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 766 IAFILCFRFRGRCGXVFSXLMNRXXRGEKAVXVLGAL 876
           I FI+C  F G  G +FS LM     G  A+ +LG +
Sbjct: 208 IPFIICMEFMGNSGRIFSGLMTSLFFG-AAMALLGVV 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,725
Number of Sequences: 27780
Number of extensions: 270204
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)