Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_O18.2
(1339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 41 4e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 37 0.007
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.017
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.029
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.039
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -2
Query: 648 KKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXX-PXPPPPPXXNPXXXPPPXP 493
K P PP P P P P PP P P PPPPP PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAP---IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 34.3 bits (75), Expect = 0.039
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -2
Query: 639 PTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPPPXP 493
PT P P P P P P PPPP P PP P PPP P
Sbjct: 742 PT-PAPAPIPVPPPAP---IMGGPPPP---PPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 708 PPPXXPXXXFFFXXGGGPXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPP 529
PPP P P P P P P P P PPPP PPPPP
Sbjct: 732 PPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP-----PPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 564 PPXXXPXPPPPPXXNPXXXPPPXP 493
PP P PPPPP P PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 430 PPPXXFPFFXXKXXXPXPPPPXXKKK 353
PPP P F P PPPP KK
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKK 35
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.017
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = -2
Query: 639 PTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPP----PPXXNPXXXPPPXP 493
P PPP P P P P PPP P P P PP P PP P
Sbjct: 1189 PPVPPPSEAP-PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Frame = -2
Query: 657 PXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPP----PPXXNPXXXPPPXP 493
P P P P P P P P P P PP PP P PP P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 31.5 bits (68), Expect = 0.27
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Frame = -2
Query: 639 PTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPP----PPXXNPXXXPP-PXP 493
P P P P P P PPP P P P PP P PP P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Frame = -2
Query: 639 PTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPP----PPXXNPXXXPP-PXP 493
P P P P P P P P P P P PP P PP P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Frame = -2
Query: 666 GGGPXXKKKPTXPP---PXXXPXPXPXP*XTFXXXPPPPXXXPXPPP----PPXXNPXXX 508
G P K PP P P P P P P P P P P PP P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 507 PPPXP 493
PP P
Sbjct: 1178 IPPVP 1182
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Frame = -2
Query: 663 GGPXXKKKPTXPPPXXXP---XPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPP 502
G P K PP P P P P P P P P P P PP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -2
Query: 657 PXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPPPXP 493
P P P P P P P PP P PP P + P P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAP----SGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -2
Query: 657 PXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPPPXP 493
P + P P P P P P PP P PP P P P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPP----STAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = -2
Query: 645 KKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPP-PPPXXNPXXXPPPXP 493
K P P P P P P PP P PP P PPP P
Sbjct: 1020 KAPPVPLPSADAPPIPVP----STAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.029
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = -2
Query: 657 PXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXP 505
P + + PP P P P P PPPP P P PP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP----MSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = -2
Query: 639 PTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXP---PPPPXXNPXXXPPPXP 493
P PP P P + PPPP P P PP P P PPP P
Sbjct: 1686 PVSTPPVRPQSAAP-PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -2
Query: 657 PXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPPPXP 493
P PT PPP P P PP P P PPPP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSA-------PPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.039
Identities = 23/99 (23%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Frame = -3
Query: 632 PPXPXXXPFPXPXXKXPFXXXPPPPXXXXXXXXPLEXTPXXPXPPXPPXXXXXXXXXIXT 453
PP P P P + P P PP + P P P P I +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP---VSMNPAINS 286
Query: 452 XNKKXXXPPPR--XXXXXXXKXXXPPXPPPXXKKKKXXP 342
+K PP PP PPP ++ + P
Sbjct: 287 TSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP 325
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -2
Query: 639 PTXPP--PXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXPPPXP 493
P+ PP P P P P + PP P P PP P P P P P
Sbjct: 433 PSAPPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -2
Query: 639 PTXPP-PXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNP 517
P PP P P P P PP P P PPP P P
Sbjct: 444 PAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 28.3 bits (60), Expect = 2.5
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = -2
Query: 711 PPPPXXPXXXFFFXXGGGPXXKKKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPP 532
PPPP P G P P P P P P PP PPPP
Sbjct: 311 PPPPPPPSRR---NRGKPPIGNGSSNSSLP---PPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 531 PXXN-PXXXPPPXP 493
P + P P P
Sbjct: 365 PPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = -2
Query: 645 KKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNP---XXXPPPXP 493
+ P P P P P P + PP P P P NP PP P
Sbjct: 240 RPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.156 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,414
Number of Sequences: 5004
Number of extensions: 30984
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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