Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O18.2
         (1339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.12 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -2

Query: 645 KKPTXPPPXXXPXPXPXP*XTFXXXPPPPXXXPXPPPPPXXNPXXXP 505
           ++P+   P   P P   P       PP P   P P  PP   P   P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 564 PPXXXPXPPPPPXXNP 517
           PP   P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 564  PPXXXPXPPPPPXXN 520
            P    P PPPPP  N
Sbjct: 1852 PVSGSPEPPPPPPRN 1866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.156    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,846
Number of Sequences: 438
Number of extensions: 9357
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46224255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)