Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_O16.2
(1318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.094
07_01_0080 + 587674-588510 32 0.88
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 32 1.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 4.7
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 27 7.0
09_01_0016 - 376742-376883,377973-378964 25 9.4
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.5 bits (78), Expect = 0.094
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPP 309
P P P P PP P G P GP PP G+ P PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPP 309
P P P PPPPP P P K PP + +P PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = +3
Query: 90 PXXPGXXXXVXVGXPXGXXPRXPVLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGXPSX 269
P P V P P P PPPP AP KG P
Sbjct: 297 PSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356
Query: 270 XXGAXKKPPXXPP 308
PP PP
Sbjct: 357 PPPKGPSPPPPPP 369
>07_01_0080 + 587674-588510
Length = 278
Score = 32.3 bits (70), Expect = 0.88
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXF 231
P P PS G P PPPPP P P F
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLF 123
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = +1
Query: 151 GXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGP 324
G P P PPPPP P P P ++ PP G + P PP GP
Sbjct: 262 GGPPRPPPPQVPPPPPQAP--PPPPPNAPMGMPPRIPPPPVGG-TQPPPPPPPLANGP 316
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 3.5
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXG-PKKVXPPXXXGQXKNPXKXPP 309
P P PS P PPPPP P P P PP P PP
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPP 605
Query: 310 GXXGP 324
P
Sbjct: 606 PPPPP 610
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +1
Query: 157 PSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGP 324
PS PPPPP P P F P PP + PP P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.5
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPP 309
P P P G P PP P P P + P+ PP P PP
Sbjct: 6 PYAPHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPP 64
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 184 PPPPPXXPRGXGXPXFXXXXG-PKKVXPPXXXGQXKNPXKXPP 309
PPPPP P P F G P++ PP P PP
Sbjct: 55 PPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPP 97
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPPPXXP--RGXGXPXFXXXXGPKKVXPP 267
P P P P PPPPP G G P GP+ PP
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPP 399
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 27.1 bits (57), Expect(2) = 7.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXP 207
PG P P PPPPP P
Sbjct: 24 PGFPVAPPPPMGPPPPPPMP 43
Score = 20.6 bits (41), Expect(2) = 7.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 184 PPPPPXXPR 210
PPPPP P+
Sbjct: 54 PPPPPWLPQ 62
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 25.4 bits (53), Expect(2) = 9.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 151 GXPSXGXPXXXPPPPPXXP 207
G P+ P PPPPP P
Sbjct: 49 GAPTKKAPFVAPPPPPPPP 67
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 184 PPPPPXXPRGXG 219
PPPPP P+ G
Sbjct: 63 PPPPPPPPQQNG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,663
Number of Sequences: 37544
Number of extensions: 212959
Number of successful extensions: 2124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4120436808
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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