Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_O16.2
(1318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.021
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.021
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 33 0.34
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 33 0.34
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 33 0.45
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 33 0.59
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 33 0.59
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 32 1.0
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 32 1.0
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 31 1.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 1.7
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 1.7
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 31 1.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 3.2
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 30 3.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 3.2
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 30 3.2
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 4.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 4.2
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.5
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 5.5
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 5.5
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 7.3
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 7.3
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 7.3
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 7.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 7.3
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 7.3
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 29 7.3
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 9.6
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 9.6
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 9.6
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 9.6
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 9.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.5 bits (83), Expect = 0.021
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGX-PXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGP 324
P PS G P PPPP P G P P + PP G P PPG P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM---PPPPPPGMRYP 344
Query: 325 XG 330
G
Sbjct: 345 GG 346
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.5 bits (83), Expect = 0.021
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGX-PXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGP 324
P PS G P PPPP P G P P + PP G P PPG P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM---PPPPPPGMRYP 354
Query: 325 XG 330
G
Sbjct: 355 GG 356
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 33.5 bits (73), Expect = 0.34
Identities = 20/61 (32%), Positives = 22/61 (36%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGPX 327
PG S G PP P PRG P + PP G+ P PPG G
Sbjct: 203 PGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPP--GPPGPRGEP 260
Query: 328 G 330
G
Sbjct: 261 G 261
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 33.5 bits (73), Expect = 0.34
Identities = 20/61 (32%), Positives = 22/61 (36%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGPX 327
PG S G PP P PRG P + PP G+ P PPG G
Sbjct: 203 PGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPP--GPPGPRGEP 260
Query: 328 G 330
G
Sbjct: 261 G 261
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 33.1 bits (72), Expect = 0.45
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXG-PKKVXPPXXXGQXKNPXK- 300
G P P PS PP PP P G G G P + P G+ K
Sbjct: 154 GPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKP 213
Query: 301 XPPGXXGPXG 330
PG GP G
Sbjct: 214 GQPGRPGPPG 223
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 32.7 bits (71), Expect = 0.59
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 248 GPXXXXXXGXPXPRGXXGGGGGXXXGXPXDGXPGXXXXGXP 126
GP G P PRG GGGGG G P P G P
Sbjct: 617 GPGGPGGGGGP-PRGPGGGGGGGPTGPPAPPKPPAKPRGRP 656
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 32.7 bits (71), Expect = 0.59
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 248 GPXXXXXXGXPXPRGXXGGGGGXXXGXPXDGXPGXXXXGXP 126
GP G P PRG GGGGG G P P G P
Sbjct: 617 GPGGPGGGGGP-PRGPGGGGGGGPTGPPAPPKPPAKPRGRP 656
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +3
Query: 90 PXXPGXXXXVXVGXPXGXXPRXPVLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGXPSX 269
P PG G P PV+ P P P PG G Q G P+
Sbjct: 121 PGAPGAWGMPGNPGKGGSGPCHPVVPTPCK---PCPGGRPGPPGPPGRPGSDGQPGRPAT 177
Query: 270 XXGAXKKPPXXPPRXPXAPXXXXGXXG 350
GA +P P+ P G G
Sbjct: 178 GGGAAPRPGPPGPKGPRGAPGNSGRAG 204
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 31.9 bits (69), Expect = 1.0
Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNP-XKX 303
G P P + P PP PP P G P G P
Sbjct: 196 GAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAG 255
Query: 304 PPGXXGPXG 330
PPG GP G
Sbjct: 256 PPGPPGPPG 264
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 31.5 bits (68), Expect = 1.4
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Frame = +1
Query: 148 PGXPSXGXPXXX-----PPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPG 312
PG P P PP PP P G P P + P G P PPG
Sbjct: 176 PGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPP--GPPG 233
Query: 313 XXGPXG 330
GP G
Sbjct: 234 QAGPDG 239
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.5 bits (58), Expect(2) = 1.7
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +1
Query: 187 PPPPXXPRGXGXPXFXXXXGPKK----VXPPXXXGQXKNPXKXPPGXXGPXG 330
PPPP RG G P P + PP GQ + P + G GP G
Sbjct: 723 PPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQYQ-PQQQQGGPMGPPG 773
Score = 22.2 bits (45), Expect(2) = 1.7
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRG 213
P P G PPPP P G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYG 701
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.5 bits (58), Expect(2) = 1.7
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +1
Query: 187 PPPPXXPRGXGXPXFXXXXGPKK----VXPPXXXGQXKNPXKXPPGXXGPXG 330
PPPP RG G P P + PP GQ + P + G GP G
Sbjct: 723 PPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQYQ-PQQQQGGPMGPPG 773
Score = 22.2 bits (45), Expect(2) = 1.7
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRG 213
P P G PPPP P G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYG 701
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 31.1 bits (67), Expect = 1.8
Identities = 20/61 (32%), Positives = 21/61 (34%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGPX 327
PG P P PP PP G P P PP GQ + PPG G
Sbjct: 170 PGEPGPKGPIG-PPGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQ--QGPPGPPGSN 226
Query: 328 G 330
G
Sbjct: 227 G 227
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNP-XKXPPGXXGP 324
PG P P P P+ P P PP GQ P PPG GP
Sbjct: 104 PGKPGKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPPGEQGP 163
Query: 325 XG 330
G
Sbjct: 164 KG 165
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Frame = +1
Query: 127 GXPXXXXPGX--PSXGXPXXXPPPPPXXPRGXGXPXFXXXXG---PKKVXPPXXXGQXKN 291
G P PG P G P PPP P G P G P PP +
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 292 PXKXPPGXXGP 324
P PPG P
Sbjct: 785 PPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Frame = +1
Query: 127 GXPXXXXPGX--PSXGXPXXXPPPPPXXPRGXGXPXFXXXXG---PKKVXPPXXXGQXKN 291
G P PG P G P PPP P G P G P PP +
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 292 PXKXPPGXXGP 324
P PPG P
Sbjct: 785 PPPPPPGMFAP 795
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.8
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = -3
Query: 329 PXGPXXPGGXXXGFFXCPXXXGGXTFLGPXXXXXXGX-PXPRGXXGGGGGXXXGXPXDGX 153
P GP PGG P G GP G P P G G G G P G
Sbjct: 400 PQGPGGPGGYGP---PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGA 456
Query: 152 PGXXXXGXPHXN 117
P G P N
Sbjct: 457 PPPGAAGAPGGN 468
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/72 (33%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Frame = +1
Query: 124 WGXPXXXXPGXP-SXGXPXXXP----PPPPXXPRGXGXPXFXXXXGPKKVXPPXXXG-QX 285
+G P PG P S G P P PPPP P G P P PP G
Sbjct: 409 YGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPP--PTGFPPVGAPPPGAAGAPG 466
Query: 286 KNPXKXPPGXXG 321
NP P G
Sbjct: 467 GNPFARGPSATG 478
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 323 GPXXPGGXXXGFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDGXPG 147
GP F P GG GP G P G GG G G P G PG
Sbjct: 385 GPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPG-GFGPPPPGGPG 442
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Frame = +1
Query: 127 GXPXXXXPGX--PSXGXPXXXPPPPPXXPRGXGXPXFXXXXG---PKKVXPPXXXGQXKN 291
G P PG P G P PPP P G P G P PP +
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367
Query: 292 PXKXPPGXXGP 324
P PPG P
Sbjct: 368 PPPPPPGMFAP 378
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNP-XKX 303
G P P PPP P G P GP P G+ +P
Sbjct: 128 GAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGP--AGPAGPDGEAGSPAAPS 185
Query: 304 PPGXXGPXG 330
PPG GP G
Sbjct: 186 PPGPPGPPG 194
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/73 (32%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Frame = -3
Query: 329 PXGPXXPGGXXXGFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGX-----P 165
P GP GG G P GG GP P RG G GG G P
Sbjct: 300 PRGPGGRGGRGQGPDFGPGGQGGRG-QGPDFGPQDDFPGRRGSGGPGGRGGRGQGPDFEP 358
Query: 164 XDGXPGXXXXGXP 126
D PG G P
Sbjct: 359 QDDFPGRRGSGGP 371
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = +1
Query: 151 GXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGP 324
G PS G P P P G P PP G P + PPG GP
Sbjct: 208 GPPSPGPVDPSEDPKPSEPPSPGP--VDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGP 263
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.3 bits (65), Expect = 3.2
Identities = 19/68 (27%), Positives = 22/68 (32%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXP 306
G P P G P P PP G P GP + P + +N P
Sbjct: 220 GMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPPGPPGMAGPDGI-PGMGGAKGQNGPDGP 278
Query: 307 PGXXGPXG 330
PG G G
Sbjct: 279 PGASGESG 286
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 147 PRXPVLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGXPSXXXGAXKKPPXXPPRXPXAP 326
P P+ P P P PG G G P + P PP P AP
Sbjct: 136 PCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 147 PRXPVLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGXPSXXXGAXKKPPXXPPRXPXAP 326
P P+ P P P PG G G P + P PP P AP
Sbjct: 136 PCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Frame = +1
Query: 157 PSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXP------PXXXGQXKNPXKXPPGXX 318
P P P P P+G G P V P P G P PPG
Sbjct: 244 PGPQVPGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAP 303
Query: 319 GPXG 330
GP G
Sbjct: 304 GPGG 307
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -3
Query: 329 PXGPXXPGGXXX--GFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDG 156
P GP P G G P G GP G P P G G G G P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPA 246
Query: 155 XP 150
P
Sbjct: 247 GP 248
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -3
Query: 329 PXGPXXPGGXXX--GFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDG 156
P GP P G G P G GP G P P G G G G P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPA 246
Query: 155 XP 150
P
Sbjct: 247 GP 248
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -3
Query: 329 PXGPXXPGGXXX--GFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDG 156
P GP P G G P G GP G P P G G G G P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPA 246
Query: 155 XP 150
P
Sbjct: 247 GP 248
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -3
Query: 329 PXGPXXPGGXXX--GFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDG 156
P GP P G G P G GP G P P G G G G P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPA 246
Query: 155 XP 150
P
Sbjct: 247 GP 248
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 308 GGXXXGFFXCPXXXGGXTFLGPXXXXXXGXPXPRGXXGGGGGXXXGXPXDG 156
GG G + P G G PRG GGGGG G P G
Sbjct: 522 GGGYGGGYGGPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGPPGRG 572
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXP 306
G P P P+ P P P P P GP P G +P K
Sbjct: 945 GPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNG-PSDPVKPS 1003
Query: 307 PGXXGPXG 330
P P G
Sbjct: 1004 PSGPSPNG 1011
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = +1
Query: 124 WGXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKX 303
W P P P+ P P P P G P GP + P G
Sbjct: 1036 WPSPNGPSPNGPNG--PSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPS 1093
Query: 304 PPGXXGPXG 330
P GP G
Sbjct: 1094 DPNKPGPNG 1102
Score = 29.5 bits (63), Expect = 5.5
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGPX 327
PG P P P P G P GP + P G + P GP
Sbjct: 1182 PGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPN 1241
Query: 328 G 330
G
Sbjct: 1242 G 1242
Score = 29.1 bits (62), Expect = 7.3
Identities = 18/68 (26%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXPPPP--PXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXP 306
P P P+ P P P P P P GP P G +
Sbjct: 1024 PNGPSPNGPTPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNK 1083
Query: 307 PGXXGPXG 330
PG GP G
Sbjct: 1084 PGPNGPNG 1091
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXG-QXKNPXKXP--PGXX 318
PG P P P P G P GP + P G N P PG
Sbjct: 1140 PGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNESSDPNKPGPNGPNEPSDPNKPGPN 1199
Query: 319 GPXG 330
GP G
Sbjct: 1200 GPNG 1203
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXG-QXKNPXKXP--PGXX 318
PG P P P P G P GP + P G N P PG
Sbjct: 1098 PGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPN 1157
Query: 319 GPXG 330
GP G
Sbjct: 1158 GPNG 1161
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXG-QXKNPXKXP--PGXX 318
PG P P P P G P GP + P G N P PG
Sbjct: 1280 PGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPN 1339
Query: 319 GPXG 330
GP G
Sbjct: 1340 GPNG 1343
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPKKVXPPXXXGQXKNPXKXPPGXXGPX 327
PG P P P P G P GP + P G P GP
Sbjct: 1322 PGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGSSDPNKPGPN 1381
Query: 328 G 330
G
Sbjct: 1382 G 1382
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPK-KVXPPXXXGQXKNPXKXPPGXXGP 324
PG P P PP P P G P GPK P G NP PG G
Sbjct: 219 PGAPGQAGPQG-PPGPAGSPGAPGGPGQAGAPGPKGPSGAPGQPGADGNP--GAPGQPGQ 275
Query: 325 XG 330
G
Sbjct: 276 SG 277
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPK-KVXPPXXXGQXKNPXKXPPGXXGP 324
PG P P PP P P G P GPK P G NP PG G
Sbjct: 219 PGAPGQAGPQG-PPGPAGSPGAPGGPGQAGAPGPKGPSGAPGQPGADGNP--GAPGQPGQ 275
Query: 325 XG 330
G
Sbjct: 276 SG 277
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 PGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPK-KVXPPXXXGQXKNPXKXPPGXXGP 324
PG P P PP P P G P GPK P G NP PG G
Sbjct: 219 PGAPGQAGPQG-PPGPAGSPGAPGGPGQAGAPGPKGPSGAPGQPGADGNP--GAPGQPGQ 275
Query: 325 XG 330
G
Sbjct: 276 SG 277
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXP-----PPPPXXPRGXGXPXFXXXXGPKKVXPP----XXXGQX 285
P P P+ G P P PPPP P+ G P PP G
Sbjct: 588 PSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAG 647
Query: 286 KNPXKXPPGXXGPXG 330
P PP G G
Sbjct: 648 APPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Frame = +1
Query: 133 PXXXXPGXPSXGXPXXXP-----PPPPXXPRGXGXPXFXXXXGPKKVXPP----XXXGQX 285
P P P+ G P P PPPP P+ G P PP G
Sbjct: 414 PSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAG 473
Query: 286 KNPXKXPPGXXGPXG 330
P PP G G
Sbjct: 474 APPPPPPPPPSGAGG 488
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Frame = +1
Query: 127 GXPXXXXPGXPSXGXPXXXPPPPPXXPRGXGXPXFXXXXGPK----KVXPPXXXGQXKNP 294
G P P P PP PP G P GP K P G+ N
Sbjct: 143 GPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPGENGNN 202
Query: 295 XKXPPGXXGPXG 330
+ PG G G
Sbjct: 203 GEPQPGAPGEPG 214
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +3
Query: 171 PXXXXPPPPXXAPGXGAXXXXXGXGXQKGXPSXXXGAXKKPPXXPPRXPXAPXXXXGXXG 350
P PP P PG G G P PP PP P P G G
Sbjct: 174 PGPPGPPGPPGRPGPNGKAGANGLNGNPGRPPEAPCEPVTPPPCPP-CPAGPKGAPGQAG 232
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 28.7 bits (61), Expect = 9.6
Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Frame = +3
Query: 90 PXXPGXXXXVXVGXPXGXXPRXP---VLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGX 260
P PG G P+ P + P P P APG G Q G
Sbjct: 117 PGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPPGAPGLPGDQGDKGEAGQPGQ 176
Query: 261 PSXXXGAXKKPPXXPPRXPXAP 326
P ++ P P P P
Sbjct: 177 PGSDAAPGEQGPKGPNGAPGKP 198
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 28.7 bits (61), Expect = 9.6
Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Frame = +3
Query: 90 PXXPGXXXXVXVGXPXGXXPRXP---VLRXPXXXXPPPPXXAPGXGAXXXXXGXGXQKGX 260
P PG G P+ P + P P P APG G Q G
Sbjct: 117 PGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPPGAPGLPGDQGDKGEAGQPGQ 176
Query: 261 PSXXXGAXKKPPXXPPRXPXAP 326
P ++ P P P P
Sbjct: 177 PGSDAAPGEQGPKGPNGAPGKP 198
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 9.6
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 118 LXWGXPXXXXPGXP--SXGXPXXXPPP--PPXXPRGXGXPXFXXXXGPKKVXPPXXXGQX 285
L +G P G P G P PPP P P G P P V PP
Sbjct: 70 LKYGQPMPHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSL-LG 128
Query: 286 KNPXKXPPGXXGP 324
P PP P
Sbjct: 129 PPPFSVPPSVPPP 141
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 9.6
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 118 LXWGXPXXXXPGXP--SXGXPXXXPPP--PPXXPRGXGXPXFXXXXGPKKVXPPXXXGQX 285
L +G P G P G P PPP P P G P P V PP
Sbjct: 93 LKYGQPMPHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSL-LG 151
Query: 286 KNPXKXPPGXXGP 324
P PP P
Sbjct: 152 PPPFSVPPSVPPP 164
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 9.6
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Frame = +1
Query: 118 LXWGXPXXXXPGXP--SXGXPXXXPPP--PPXXPRGXGXPXFXXXXGPKKVXPPXXXGQX 285
L +G P G P G P PPP P P G P P V PP
Sbjct: 343 LKYGQPMPHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSL-LG 401
Query: 286 KNPXKXPPGXXGP 324
P PP P
Sbjct: 402 PPPFSVPPSVPPP 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,281,952
Number of Sequences: 27780
Number of extensions: 178362
Number of successful extensions: 1246
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3683964012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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