Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O13.2
         (1276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    40   0.004
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    39   0.009
U13643-4|AAA21082.2|  258|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 122 PMXQRASAGAXSNGIPNXFRSFR-EXVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFE 298
           P  Q+A  G         F+++  +  +  +P  I  YL+Y+  ++ +   +RKNPADF 
Sbjct: 28  PNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYLLYDWAKKTNVAANRKNPADFA 87

Query: 299 NDQ 307
           NDQ
Sbjct: 88  NDQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 122 PMXQRASAGAXSNGIPNXFRSFR-EXVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFE 298
           P  Q+A  G         F+++  +  +  +P  I  YL+Y+  ++ +   +RKNPADF 
Sbjct: 28  PNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLLYDWAKKTNVAANRKNPADFA 87

Query: 299 NDQ 307
           ND+
Sbjct: 88  NDE 90


>U13643-4|AAA21082.2|  258|Caenorhabditis elegans Hypothetical
           protein T07E3.3 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 48  AXHHSGQTLWSXRSP-SGSCHLQALC 122
           A HH G+ LW  R P    CH+  +C
Sbjct: 143 AIHHLGKRLWEQRLPVHYGCHMSTVC 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,659
Number of Sequences: 27780
Number of extensions: 140906
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)