Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O10.2
         (1353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 485 IPPPHLXSXXLFXKK-PXNPXKXPKPXNPPXKXKXKPPPKKXKIXXKXFFPKXXPXXPPP 661
           IPPP   S      K P  P   P P  P      K PP    +      P   P  PPP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQP--AAPVKSPPSAPSLPSA--VPPMPPKVPPP 204

Query: 662 P 664
           P
Sbjct: 205 P 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
 Frame = +2

Query: 485 IPPPHLXSXXLFXKKPXNPXKXPKPXNPPXKXKXKPP--PKKXKIXXKXFFP-KXXPXXP 655
           IPPP   +       P  P   P   NP      KPP  P   ++        K  P  P
Sbjct: 256 IPPPSNGTVSSPPNSPPRPIA-PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314

Query: 656 PPP 664
           PPP
Sbjct: 315 PPP 317


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -1

Query: 660 GGGXXGXXFGKKXFXKIFXFXGGGFXFXXXGGF-XGLGXXWGFXGFFXXXIXXFKWGGGI 484
           GGG  G   G   F     F G G      GGF  G G   G  G F      F  GGG+
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF--GGGL 251

Query: 483 XDF 475
             F
Sbjct: 252 GGF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,972
Number of Sequences: 5004
Number of extensions: 12499
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)